ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
sbi-r.1	8077182	uncharacterized LOC8077182
sbi-r.1	8072512	uncharacterized LOC8072512
zma-u.5	100192698	uncharacterized LOC100192698
zma-u.5	100276348	cytoplasmic membrane protein
osa-u.5	4337558	uncharacterized LOC4337558
tae-r.2	123183356	uncharacterized LOC123183356
tae-r.2	123149354	uncharacterized LOC123149354
tae-r.2	123070481	uncharacterized LOC123070481
hvu-r.1	123452532	uncharacterized LOC123452532
bdi-r.1	100845918	uncharacterized LOC100845918
ath-u.5	AT4G10140	uncharacterized protein
ath-u.5	AT1G33490	E3 ubiquitin-protein ligase
gma-u.5	100500088	uncharacterized LOC100500088
gma-u.5	100305584	uncharacterized LOC100305584
sly-u.5	101252894	uncharacterized LOC101252894
sly-u.5	101255263	cytoplasmic membrane protein
bra-r.6	103840058	uncharacterized LOC103840058
bra-r.6	103838902	uncharacterized LOC103838902
bra-r.6	103853566	uncharacterized LOC103853566
vvi-u.5	100248177	uncharacterized LOC100248177
ppo-u.5	7479019	uncharacterized LOC7479019
ppo-u.5	7483548	uncharacterized LOC7483548
mtr-u.5	11432289	uncharacterized LOC11432289
mtr-u.5	11418373	uncharacterized LOC11418373
ghi-r.1	107959560	uncharacterized LOC107959560
ghi-r.1	107914057	uncharacterized LOC107914057
bna-r.1	BNAC06G07640D	uncharacterized BNAC06G07640D
bna-r.1	106359690	uncharacterized LOC106359690
bna-r.1	BNAA02G23450D	uncharacterized BNAA02G23450D
sot-r.1	102604974	uncharacterized LOC102604974
sot-r.1	102580100	uncharacterized LOC102580100
cit-r.1	102625813	uncharacterized LOC102625813
nta-r.1	107816181	uncharacterized LOC107816181
nta-r.1	107789678	uncharacterized LOC107789678
nta-r.1	107780701	uncharacterized LOC107780701

Top 50 coexpressed genes to 8077182 (sbi-r.1 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 8077182 (sbi-r.1 coexpression data)

CoexMap"8077182"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO CC

GO:0043231 [list] [network] intracellular membrane-bounded organelle

(5420 genes)

IEA

GO MF

Protein

XP_002451624.1 [sequence] [blastp]

Subcellular
localization
wolf

vacu 4, plas 2, E.R._vacu 2, cyto 1, pero 1, cyto_pero 1, E.R._plas 1

(predict for XP_002451624.1)

Subcellular
localization
TargetP

other 4, mito 3

(predict for XP_002451624.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	sbi-r.1 for 8077182	sbi-r.1 for 8072512	zma-u.5 for 100192698	zma-u.5 for 100276348	osa-u.5 for 4337558	tae-r.2 for 123183356	tae-r.2 for 123149354	tae-r.2 for 123070481	hvu-r.1 for 123452532	bdi-r.1 for 100845918	ath-u.5 for AT4G10140	ath-u.5 for AT1G33490	gma-u.5 for 100500088	gma-u.5 for 100305584	sly-u.5 for 101252894	sly-u.5 for 101255263	bra-r.6 for 103840058	bra-r.6 for 103838902	bra-r.6 for 103853566	vvi-u.5 for 100248177	ppo-u.5 for 7479019	ppo-u.5 for 7483548	mtr-u.5 for 11432289	mtr-u.5 for 11418373	ghi-r.1 for 107959560	ghi-r.1 for 107914057	bna-r.1 for BNAC06G07640D	bna-r.1 for 106359690	bna-r.1 for BNAA02G23450D	sot-r.1 for 102604974	sot-r.1 for 102580100	cit-r.1 for 102625813	nta-r.1 for 107816181	nta-r.1 for 107789678	nta-r.1 for 107780701

Ortholog

Ortholog ID: 4940

Species

sbi

zma

osa

tae

hvu

bdi

ath

gma

sly

bra

vvi

ppo

mtr

ghi

bna

sot

cit

nta

Symbol

Function^*

uncharacterized LOC8077182

uncharacterized LOC8072512

uncharacterized LOC100192698

cytoplasmic membrane protein

uncharacterized LOC4337558

uncharacterized LOC123183356

uncharacterized LOC123149354

uncharacterized LOC123070481

uncharacterized LOC123452532

uncharacterized LOC100845918

uncharacterized protein

E3 ubiquitin-protein ligase

uncharacterized LOC100500088

uncharacterized LOC100305584

uncharacterized LOC101252894

cytoplasmic membrane protein

uncharacterized LOC103840058

uncharacterized LOC103838902

uncharacterized LOC103853566

uncharacterized LOC100248177

uncharacterized LOC7479019

uncharacterized LOC7483548

uncharacterized LOC11432289

uncharacterized LOC11418373

uncharacterized LOC107959560

uncharacterized LOC107914057

uncharacterized BNAC06G07640D

uncharacterized LOC106359690

uncharacterized LOC106407051

uncharacterized LOC102604974

uncharacterized LOC102580100

uncharacterized LOC102625813

uncharacterized LOC107789678

uncharacterized LOC107780701

uncharacterized LOC107820904

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03083	Polycomb repressive complex	2
sbi04120	Ubiquitin mediated proteolysis	2
sbi04141	Protein processing in endoplasmic reticulum	2
sbi00480	Glutathione metabolism	2
sbi04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi04120	Ubiquitin mediated proteolysis	4
sbi04136	Autophagy - other	2
sbi03083	Polycomb repressive complex	2
sbi04141	Protein processing in endoplasmic reticulum	2
sbi04146	Peroxisome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma00500	Starch and sucrose metabolism	2
zma00053	Ascorbate and aldarate metabolism	2
zma00480	Glutathione metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03082	ATP-dependent chromatin remodeling	3
tae03083	Polycomb repressive complex	3
tae00600	Sphingolipid metabolism	3
tae00440	Phosphonate and phosphinate metabolism	3
tae00564	Glycerophospholipid metabolism	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae04120	Ubiquitin mediated proteolysis	4
tae04142	Lysosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03420	Nucleotide excision repair	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath04148	Efferocytosis	2
ath04145	Phagosome	2
ath04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath00480	Glutathione metabolism	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma04136	Autophagy - other	6
gma00051	Fructose and mannose metabolism	2
gma00520	Amino sugar and nucleotide sugar metabolism	2
gma01240	Biosynthesis of cofactors	2
gma01250	Biosynthesis of nucleotide sugars	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly00061	Fatty acid biosynthesis	6
sly01212	Fatty acid metabolism	6
sly00780	Biotin metabolism	4
sly01240	Biosynthesis of cofactors	4
sly00010	Glycolysis / Gluconeogenesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03015	mRNA surveillance pathway	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra00190	Oxidative phosphorylation	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi04136	Autophagy - other	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04120	Ubiquitin mediated proteolysis	2
ppo04130	SNARE interactions in vesicular transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo00190	Oxidative phosphorylation	3
ppo04142	Lysosome	3
ppo04145	Phagosome	3
ppo04136	Autophagy - other	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr04712	Circadian rhythm - plant	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr04136	Autophagy - other	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna04130	SNARE interactions in vesicular transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna04142	Lysosome	2
bna03083	Polycomb repressive complex	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03060	Protein export	6
bna04142	Lysosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot00910	Nitrogen metabolism	3
sot01200	Carbon metabolism	3
sot01230	Biosynthesis of amino acids	2
sot00195	Photosynthesis	2
sot00030	Pentose phosphate pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot04075	Plant hormone signal transduction	5
sot04016	MAPK signaling pathway - plant	4
sot04142	Lysosome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit00190	Oxidative phosphorylation	2
cit04145	Phagosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00240	Pyrimidine metabolism	2
nta01232	Nucleotide metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04144	Endocytosis	4
nta04146	Peroxisome	2
nta00520	Amino sugar and nucleotide sugar metabolism	2
nta01250	Biosynthesis of nucleotide sugars	2
nta04517	IgSF CAM signaling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00240	Pyrimidine metabolism	2
nta01232	Nucleotide metabolism	2
nta04712	Circadian rhythm - plant	2

Expression

Expression pattern

Entrez Gene ID^*

8077182

8072512

100192698

100276348

4337558

123183356

123149354

123070481

123452532

100845918

826605

840243

100500088

100305584

101252894

101255263

103840058

103838902

103853566

100248177

7479019

7483548

11432289

11418373

107959560

107914057

106411680

106359690

106407051

102604974

102580100

102625813

107789678

107780701

107820904

The preparation time of this page was 0.2 [sec].


Species	sbi	zma	osa	tae	hvu	bdi	ath	gma	sly	bra	vvi	ppo	mtr	ghi	bna	sot	cit	nta	cre
Paralog	2	2	1	3	1	1	2	2	2	3	1	2	2	2	3	2	1	3	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 8077182 (sbi-r.1 coexpression data)

Top 50 enrichment test to 8077182 (sbi-r.1 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**