ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
sbi-r.1	8077369	uncharacterized LOC8077369
sbi-r.1	110429803	uncharacterized LOC110429803
zma-u.5	118473497	uncharacterized LOC118473497
zma-u.5	100381690	Calcium-dependent lipid-binding (CaLB domain) family protein
zma-u.5	100280161	uncharacterized LOC100280161
osa-u.5	4325399	uncharacterized LOC4325399
osa-u.5	4331924	uncharacterized LOC4331924
tae-r.2	123059398	uncharacterized LOC123059398
tae-r.2	123093148	uncharacterized LOC123093148
tae-r.2	123084970	uncharacterized LOC123084970
hvu-r.1	123440974	uncharacterized LOC123440974
hvu-r.1	123449449	uncharacterized LOC123449449
bdi-r.1	100822429	uncharacterized LOC100822429
ath-u.5	AT5G12300	Calcium-dependent lipid-binding (CaLB domain) family protein
ath-u.5	AT5G55530	Calcium-dependent lipid-binding (CaLB domain) family protein
gma-u.5	100818818	uncharacterized LOC100818818
gma-u.5	100781587	uncharacterized LOC100781587
gma-u.5	100796499	uncharacterized LOC100796499
sly-u.5	101260399	uncharacterized LOC101260399
sly-u.5	101254920	uncharacterized LOC101254920
sly-u.5	101250320	uncharacterized LOC101250320
bra-r.6	103871340	uncharacterized LOC103871340
bra-r.6	103846651	vacuolar protein sorting-associated protein 13-like protein
bra-r.6	103856983	uncharacterized LOC103856983
vvi-u.5	100262283	uncharacterized LOC100262283
vvi-u.5	100255166	uncharacterized LOC100255166
vvi-u.5	100249395	uncharacterized LOC100249395
ppo-u.5	7485082	uncharacterized LOC7485082
ppo-u.5	7471861	uncharacterized LOC7471861
ppo-u.5	7475022	uncharacterized LOC7475022
mtr-u.5	11427373	uncharacterized LOC11427373
mtr-u.5	120579310	uncharacterized LOC120579310
mtr-u.5	11444832	uncharacterized LOC11444832
ghi-r.1	107903433	uncharacterized LOC107903433
ghi-r.1	107906710	uncharacterized LOC107906710
ghi-r.1	107917825	uncharacterized LOC107917825
bna-r.1	BNAC03G14160D	uncharacterized BNAC03G14160D
bna-r.1	111211578	uncharacterized LOC111211578
bna-r.1	106371409	uncharacterized LOC106371409
sot-r.1	102592665	uncharacterized LOC102592665
sot-r.1	102599017	uncharacterized LOC102599017
sot-r.1	102590556	uncharacterized LOC102590556
cit-r.1	102619707	protein SRC2-like
cit-r.1	102624978	uncharacterized LOC102624978
cit-r.1	102609263	uncharacterized LOC102609263
nta-r.1	107762950	uncharacterized LOC107762950
nta-r.1	107791969	uncharacterized LOC107791969

Top 50 coexpressed genes to 8077369 (sbi-r.1 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 8077369 (sbi-r.1 coexpression data)

CoexMap"8077369"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO CC

GO MF

GO:0003909 [list] [network] DNA ligase activity

(4 genes)

IEA

Protein

XP_021311428.1 [sequence] [blastp]

Subcellular
localization
wolf

chlo 4, nucl 2, E.R. 1, chlo_mito 1, E.R._plas 1

(predict for XP_021311428.1)

Subcellular
localization
TargetP

other 8, mito 3

(predict for XP_021311428.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	sbi-r.1 for 8077369	sbi-r.1 for 110429803	zma-u.5 for 118473497	zma-u.5 for 100381690	zma-u.5 for 100280161	osa-u.5 for 4325399	osa-u.5 for 4331924	tae-r.2 for 123059398	tae-r.2 for 123093148	tae-r.2 for 123084970	hvu-r.1 for 123440974	hvu-r.1 for 123449449	bdi-r.1 for 100822429	ath-u.5 for AT5G12300	ath-u.5 for AT5G55530	gma-u.5 for 100818818	gma-u.5 for 100781587	gma-u.5 for 100796499	sly-u.5 for 101260399	sly-u.5 for 101254920	sly-u.5 for 101250320	bra-r.6 for 103871340	bra-r.6 for 103846651	bra-r.6 for 103856983	vvi-u.5 for 100262283	vvi-u.5 for 100255166	vvi-u.5 for 100249395	ppo-u.5 for 7485082	ppo-u.5 for 7471861	ppo-u.5 for 7475022	mtr-u.5 for 11427373	mtr-u.5 for 120579310	mtr-u.5 for 11444832	ghi-r.1 for 107903433	ghi-r.1 for 107906710	ghi-r.1 for 107917825	bna-r.1 for BNAC03G14160D	bna-r.1 for 111211578	bna-r.1 for 106371409	sot-r.1 for 102592665	sot-r.1 for 102599017	sot-r.1 for 102590556	cit-r.1 for 102619707	cit-r.1 for 102624978	cit-r.1 for 102609263	nta-r.1 for 107762950	nta-r.1 for 107791969

Ortholog

Ortholog ID: 1675

Species

sbi

zma

osa

tae

hvu

bdi

ath

gma

sly

bra

vvi

ppo

mtr

ghi

bna

sot

cit

nta

Symbol

Function^*

uncharacterized LOC8077369

uncharacterized LOC110429803

uncharacterized LOC118473497

uncharacterized LOC100280161

Calcium-dependent lipid-binding (CaLB domain) family protein

uncharacterized LOC4325399

uncharacterized LOC4331924

uncharacterized LOC123093148

uncharacterized LOC123072533

uncharacterized LOC123075706

uncharacterized LOC123440974

uncharacterized LOC123449449

uncharacterized LOC100822429

Calcium-dependent lipid-binding (CaLB domain) family protein

uncharacterized LOC100781587

uncharacterized LOC100814102

uncharacterized LOC100775760

uncharacterized LOC101260399

uncharacterized LOC101254920

uncharacterized LOC101250320

uncharacterized LOC103871340

uncharacterized LOC103856983

uncharacterized LOC103844988

uncharacterized LOC100262283

uncharacterized LOC100255166

uncharacterized LOC100249395

uncharacterized LOC7485082

uncharacterized LOC7475022

uncharacterized LOC7463888

uncharacterized LOC11427373

uncharacterized LOC120579310

uncharacterized LOC11444832

uncharacterized LOC107917825

uncharacterized LOC107922005

uncharacterized LOC107932787

uncharacterized BNAC03G14160D

uncharacterized LOC111211578

uncharacterized BNAC09G44430D

uncharacterized LOC102592665

uncharacterized LOC102599017

uncharacterized LOC102590556

protein SRC2-like

uncharacterized LOC102624978

uncharacterized LOC102609263

uncharacterized LOC107762950

uncharacterized LOC107767325

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi00940	Phenylpropanoid biosynthesis	4
sbi00941	Flavonoid biosynthesis	3
sbi00944	Flavone and flavonol biosynthesis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi00500	Starch and sucrose metabolism	3
sbi04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma04712	Circadian rhythm - plant	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa01230	Biosynthesis of amino acids	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae04141	Protein processing in endoplasmic reticulum	5
tae00510	N-Glycan biosynthesis	4
tae00513	Various types of N-glycan biosynthesis	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath04142	Lysosome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma04075	Plant hormone signal transduction	4
gma00250	Alanine, aspartate and glutamate metabolism	2
gma00410	beta-Alanine metabolism	2
gma00430	Taurine and hypotaurine metabolism	2
gma00650	Butanoate metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma00940	Phenylpropanoid biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly04130	SNARE interactions in vesicular transport	2
sly04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly01230	Biosynthesis of amino acids	3
sly03082	ATP-dependent chromatin remodeling	2
sly00290	Valine, leucine and isoleucine biosynthesis	2
sly01200	Carbon metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra04075	Plant hormone signal transduction	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra04075	Plant hormone signal transduction	3
bra00040	Pentose and glucuronate interconversions	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi00500	Starch and sucrose metabolism	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo00010	Glycolysis / Gluconeogenesis	3
ppo03410	Base excision repair	2
ppo00071	Fatty acid degradation	2
ppo00620	Pyruvate metabolism	2
ppo00030	Pentose phosphate pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo00670	One carbon pool by folate	8
ppo01230	Biosynthesis of amino acids	8
ppo01240	Biosynthesis of cofactors	5
ppo00270	Cysteine and methionine metabolism	5
ppo00630	Glyoxylate and dicarboxylate metabolism	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03050	Proteasome	2
mtr03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi04075	Plant hormone signal transduction	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi04075	Plant hormone signal transduction	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00053	Ascorbate and aldarate metabolism	4
ghi00520	Amino sugar and nucleotide sugar metabolism	4
ghi01240	Biosynthesis of cofactors	4
ghi01250	Biosynthesis of nucleotide sugars	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna00053	Ascorbate and aldarate metabolism	3
bna00480	Glutathione metabolism	3
bna00020	Citrate cycle (TCA cycle)	2
bna00270	Cysteine and methionine metabolism	2
bna00566	Sulfoquinovose metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot04016	MAPK signaling pathway - plant	2
sot04626	Plant-pathogen interaction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot00900	Terpenoid backbone biosynthesis	2
sot00908	Zeatin biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit04141	Protein processing in endoplasmic reticulum	4
cit00513	Various types of N-glycan biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04146	Peroxisome	6
nta00500	Starch and sucrose metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04141	Protein processing in endoplasmic reticulum	2
nta00906	Carotenoid biosynthesis	2

Expression

Expression pattern

Entrez Gene ID^*

8077369

110429803

118473497

100280161

107196794

4325399

4331924

123093148

123072533

123075706

123440974

123449449

100822429

835647

841478

100781587

100814102

100775760

101260399

101254920

101250320

103871340

103856983

103844988

100262283

100255166

100249395

7485082

7475022

7463888

11427373

120579310

11444832

107917825

107922005

107932787

106345986

111211578

106424610

102592665

102599017

102590556

102619707

102624978

102609263

107762950

107767325

The preparation time of this page was 0.2 [sec].


Species	sbi	zma	osa	tae	hvu	bdi	ath	gma	sly	bra	vvi	ppo	mtr	ghi	bna	sot	cit	nta	cre
Paralog	2	3	2	3	2	1	2	3	3	3	3	3	3	3	3	3	3	2	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 8077369 (sbi-r.1 coexpression data)

Top 50 enrichment test to 8077369 (sbi-r.1 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**