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Orthologous genes in OrthoFinder**

Species Gene Description
 sbi-r.1   8079922   photosystem II 10 kDa polypeptide, chloroplastic 
 zma-u.5   100281646   photosystem II3 
 osa-u.5   4342395   photosystem II 10 kDa polypeptide, chloroplastic 
 osa-u.5   4344899   photosystem II 10 kDa polypeptide, chloroplastic 
 osa-u.5   107276047   photosystem II 10 kDa polypeptide, chloroplastic 
 ath-u.5   PSBR   photosystem II subunit R 
 gma-u.5   100305752   photosystem II subunit R-like 
 gma-u.5   100499745   uncharacterized LOC100499745 
 sly-u.5   PSBR   PSII polypeptide 
 sly-u.5   101252753   photosystem II 10 kDa polypeptide, chloroplastic 
 vvi-u.5   100243967   photosystem II 10 kDa polypeptide, chloroplastic 
 ppo-u.5   18095762   photosystem II 10 kDa polypeptide, chloroplastic 
 ppo-u.5   18095761   photosystem II 10 kDa polypeptide, chloroplastic 
 ppo-u.5   7454978   photosystem II 10 kDa polypeptide, chloroplastic 
 mtr-u.5   11446770   photosystem II 10 kDa polypeptide, chloroplastic 

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Top 50 coexpressed genes to 8079922 (sbi-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 8079922 (sbi-r.1 coexpression data)

CoexMap"8079922"


sbiLOC8079922 | Entrez gene ID : 8079922      
Species sbi zma osa ath gma sly vvi ppo mtr bra nta cre hvu cit bdi sot tae bna ghi
Paralog 1 1 3 1 2 2 1 3 1 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG sbi00195 [list] [network] Photosynthesis (76 genes)
GO BP
GO:0015979 [list] [network] photosynthesis  (85 genes)  IEA  
GO CC
GO:0009654 [list] [network] photosystem II oxygen evolving complex  (19 genes)  IEA  
GO:0009523 [list] [network] photosystem II  (26 genes)  IEA  
GO:0042651 [list] [network] thylakoid membrane  (98 genes)  IEA  
GO MF
Protein XP_002459340.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 10  (predict for XP_002459340.1)
Subcellular
localization
TargetP
chlo 8  (predict for XP_002459340.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

sbi-r.1
for
8079922

.
zma-u.5
for
100281646

.
osa-u.5
for
4342395

.
osa-u.5
for
4344899

.
osa-u.5
for
107276047

.
ath-u.5
for
PSBR

.
gma-u.5
for
100305752

.
gma-u.5
for
100499745

.
sly-u.5
for
PSBR

.
sly-u.5
for
101252753

.
vvi-u.5
for
100243967

.
ppo-u.5
for
18095762

.
ppo-u.5
for
18095761

.
ppo-u.5
for
7454978

.
mtr-u.5
for
11446770

.


Ortholog ID: 2960
Species ath gma gma sly sly osa osa zma bra bra vvi ppo ppo mtr tae hvu hvu ghi ghi bna bna cre sbi sbi sot sot cit bdi nta nta
Symbol PSBR LOC100499745 LOC100305752 PSBR LOC101252753 LOC107276047 LOC4344899 LOC100281646 LOC103832382 LOC103853163 LOC100243967 LOC7454978 LOC7470970 LOC11446770 LOC123139111 LOC123402786 LOC123426277 LOC121203742 LOC121213740 LOC106353419 LOC125594920 CHLRE_06g261000v5 LOC8079922 LOC8071154 PSBR LOC102604273 LOC102626990 LOC100827496 LOC107816978 LOC107810205
Function* photosystem II subunit R uncharacterized LOC100499745 photosystem II subunit R-like PSII polypeptide photosystem II 10 kDa polypeptide, chloroplastic photosystem II 10 kDa polypeptide, chloroplastic photosystem II 10 kDa polypeptide, chloroplastic photosystem II3 photosystem II 10 kDa polypeptide, chloroplastic-like photosystem II 10 kDa polypeptide, chloroplastic-like photosystem II 10 kDa polypeptide, chloroplastic photosystem II 10 kDa polypeptide, chloroplastic photosystem II 10 kDa polypeptide, chloroplastic photosystem II 10 kDa polypeptide, chloroplastic photosystem II 10 kDa polypeptide, chloroplastic photosystem II 10 kDa polypeptide, chloroplastic-like photosystem II 10 kDa polypeptide, chloroplastic-like photosystem II 10 kDa polypeptide, chloroplastic photosystem II 10 kDa polypeptide, chloroplastic photosystem II 10 kDa polypeptide, chloroplastic photosystem II 10 kDa polypeptide, chloroplastic-like uncharacterized protein photosystem II 10 kDa polypeptide, chloroplastic photosystem II 10 kDa polypeptide, chloroplastic photosystem II 10 kDa polypeptide, chloroplastic-like photosystem II 10 kDa polypeptide, chloroplastic-like photosystem II 10 kDa polypeptide, chloroplastic photosystem II 10 kDa polypeptide, chloroplastic photosystem II 10 kDa polypeptide, chloroplastic photosystem II 10 kDa polypeptide, chloroplastic-like
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00195 Photosynthesis 13
ath00196 Photosynthesis - antenna proteins 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00195 Photosynthesis 14
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00195 Photosynthesis 11
gma00196 Photosynthesis - antenna proteins 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00195 Photosynthesis 13
sly01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04141 Protein processing in endoplasmic reticulum 11
sly00480 Glutathione metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00196 Photosynthesis - antenna proteins 5
osa00195 Photosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00195 Photosynthesis 15
osa00190 Oxidative phosphorylation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00195 Photosynthesis 10
zma00196 Photosynthesis - antenna proteins 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00195 Photosynthesis 6
bra00196 Photosynthesis - antenna proteins 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00195 Photosynthesis 7
bra01200 Carbon metabolism 3
bra00630 Glyoxylate and dicarboxylate metabolism 2
bra00710 Carbon fixation by Calvin cycle 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00195 Photosynthesis 11
vvi00196 Photosynthesis - antenna proteins 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00195 Photosynthesis 6
ppo01200 Carbon metabolism 5
ppo00630 Glyoxylate and dicarboxylate metabolism 4
ppo00710 Carbon fixation by Calvin cycle 3
ppo00260 Glycine, serine and threonine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00195 Photosynthesis 9
ppo00196 Photosynthesis - antenna proteins 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00196 Photosynthesis - antenna proteins 4
mtr00195 Photosynthesis 4
mtr00860 Porphyrin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00195 Photosynthesis 9
tae00906 Carotenoid biosynthesis 3
tae00196 Photosynthesis - antenna proteins 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00195 Photosynthesis 9
hvu00196 Photosynthesis - antenna proteins 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00052 Galactose metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04141 Protein processing in endoplasmic reticulum 7
ghi00195 Photosynthesis 2
ghi03040 Spliceosome 2
ghi04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04141 Protein processing in endoplasmic reticulum 7
ghi00195 Photosynthesis 2
ghi03040 Spliceosome 2
ghi04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00195 Photosynthesis 10
bna00790 Folate biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00195 Photosynthesis 10
bna00790 Folate biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre00195 Photosynthesis 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00280 Valine, leucine and isoleucine degradation 3
sbi00310 Lysine degradation 2
sbi00650 Butanoate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00195 Photosynthesis 7
sbi00196 Photosynthesis - antenna proteins 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00195 Photosynthesis 9
sot00190 Oxidative phosphorylation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04141 Protein processing in endoplasmic reticulum 11
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00195 Photosynthesis 11
cit00196 Photosynthesis - antenna proteins 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00195 Photosynthesis 13
bdi00710 Carbon fixation by Calvin cycle 2
bdi01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00195 Photosynthesis 13
nta00196 Photosynthesis - antenna proteins 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00195 Photosynthesis 14
nta00196 Photosynthesis - antenna proteins 2
nta00130 Ubiquinone and other terpenoid-quinone biosynthesis 2
nta01240 Biosynthesis of cofactors 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 844245 100499745 100305752 778297 101252753 107276047 4344899 100281646 103832382 103853163 100243967 7454978 7470970 11446770 123139111 123402786 123426277 121203742 121213740 106353419 125594920 5722037 8079922 8071154 102586254 102604273 102626990 100827496 107816978 107810205
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