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Orthologous genes in OrthoFinder**

Species Gene Description
 sbi-r.1   8080599   splicing factor U2af large subunit A 
 zma-u.5   100383918   uncharacterized LOC100383918 
 osa-u.5   4331556   splicing factor U2af large subunit B-like 
 osa-u.5   4325413   uncharacterized LOC4325413 
 ath-u.5   AT2G33435   RNA-binding (RRM/RBD/RNP motifs) family protein 
 gma-u.5   102666984   uncharacterized LOC102666984 
 gma-u.5   100810537   uncharacterized LOC100810537 
 sly-u.5   101258490   uncharacterized LOC101258490 
 vvi-u.5   100266510   splicing factor U2af large subunit B 
 ppo-u.5   18102464   splicing factor U2af large subunit B 
 mtr-u.5   25482990   uncharacterized LOC25482990 

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Top 50 coexpressed genes to 8080599 (sbi-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 8080599 (sbi-r.1 coexpression data)

CoexMap"8080599"


sbiLOC8080599 | Entrez gene ID : 8080599      
Species sbi zma osa ath gma sly vvi ppo mtr bra nta cre hvu cit bdi sot tae bna ghi
Paralog 1 1 2 1 2 1 1 1 1 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG sbi03040 [list] [network] Spliceosome (208 genes)
GO BP
GO CC
GO:0089701 [list] [network] U2AF complex  (8 genes)  IEA  
GO:0000243 [list] [network] commitment complex  (10 genes)  IEA  
GO:0016607 [list] [network] nuclear speck  (18 genes)  IEA  
GO:0071004 [list] [network] U2-type prespliceosome  (20 genes)  IEA  
GO MF
GO:0008187 [list] [network] poly-pyrimidine tract binding  (5 genes)  IEA  
GO:0030628 [list] [network] pre-mRNA 3'-splice site binding  (9 genes)  IEA  
Protein XP_002465895.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 9,  chlo 1,  cysk 1  (predict for XP_002465895.1)
Subcellular
localization
TargetP
other 7  (predict for XP_002465895.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

sbi-r.1
for
8080599

.
zma-u.5
for
100383918

.
osa-u.5
for
4331556

.
osa-u.5
for
4325413

.
ath-u.5
for
AT2G33435

.
gma-u.5
for
102666984

.
gma-u.5
for
100810537

.
sly-u.5
for
101258490

.
vvi-u.5
for
100266510

.
ppo-u.5
for
18102464

.
mtr-u.5
for
25482990

.


Ortholog ID: 10018
Species ath gma gma sly osa osa zma bra vvi ppo mtr tae tae hvu ghi ghi bna bna sbi sot cit bdi nta nta
Symbol AT2G33435 LOC100810537 LOC102666984 LOC101258490 LOC4331556 LOC4325413 LOC100383918 LOC103857491 LOC100266510 LOC18102464 LOC25482990 LOC123098943 LOC123105886 LOC123449835 LOC107897745 LOC107914941 LOC125582915 LOC106437799 LOC8080599 LOC102579232 LOC102614681 LOC100840355 LOC107806722 LOC107759171
Function* RNA-binding (RRM/RBD/RNP motifs) family protein uncharacterized LOC100810537 uncharacterized LOC102666984 uncharacterized LOC101258490 splicing factor U2af large subunit B-like uncharacterized LOC4325413 uncharacterized LOC100383918 titin homolog splicing factor U2af large subunit B splicing factor U2af large subunit B uncharacterized LOC25482990 uncharacterized LOC123098943 uncharacterized LOC123105886 uncharacterized LOC123449835 uncharacterized LOC107897745 uncharacterized LOC107914941 uncharacterized LOC125582915 titin homolog splicing factor U2af large subunit A uncharacterized LOC102579232 splicing factor U2af large subunit B splicing factor U2af large subunit B uncharacterized LOC107806722 uncharacterized LOC107759171
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 2
gma03015 mRNA surveillance pathway 2
gma03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03083 Polycomb repressive complex 2
sly03250 Viral life cycle - HIV-1 2
sly04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03040 Spliceosome 2
osa03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04016 MAPK signaling pathway - plant 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03040 Spliceosome 2
bra03083 Polycomb repressive complex 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03040 Spliceosome 2
vvi03008 Ribosome biogenesis in eukaryotes 2
vvi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03040 Spliceosome 4
ppo03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03040 Spliceosome 7
tae03082 ATP-dependent chromatin remodeling 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03040 Spliceosome 8
tae03082 ATP-dependent chromatin remodeling 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03082 ATP-dependent chromatin remodeling 6
ghi03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03082 ATP-dependent chromatin remodeling 6
ghi03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03082 ATP-dependent chromatin remodeling 2
bna03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03082 ATP-dependent chromatin remodeling 2
bna03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03008 Ribosome biogenesis in eukaryotes 2
sbi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03040 Spliceosome 4
sot03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03040 Spliceosome 2
cit03022 Basal transcription factors 2
cit03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi02010 ABC transporters 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 3
nta04075 Plant hormone signal transduction 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 817909 100810537 102666984 101258490 4331556 4325413 100383918 103857491 100266510 18102464 25482990 123098943 123105886 123449835 107897745 107914941 125582915 106437799 8080599 102579232 102614681 100840355 107806722 107759171
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