ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
sbi-r.1	8080940	uncharacterized LOC8080940
sbi-r.1	8078486	pollen-specific leucine-rich repeat extensin-like protein 2
zma-u.5	100272723	uncharacterized LOC100272723
zma-u.5	100281396	uncharacterized LOC100281396
osa-u.5	4325199	protein transport protein sec31
osa-u.5	4337931	actin cytoskeleton-regulatory complex protein PAN1
tae-r.2	123077284	bromodomain-containing protein 4
tae-r.2	123180655	pollen-specific leucine-rich repeat extensin-like protein 2
tae-r.2	123114312	actin cytoskeleton-regulatory complex protein PAN1
hvu-r.1	123426597	tryptophan aminotransferase-related protein 2-like
hvu-r.1	123442805	pollen-specific leucine-rich repeat extensin-like protein 2
bdi-r.1	100824075	zyxin
bdi-r.1	100838076	uncharacterized LOC100838076
ath-u.5	AT3G01560	proline-rich receptor-like kinase, putative (DUF1421)
ath-u.5	AT5G14540	basic salivary proline-rich-like protein (DUF1421)
gma-u.5	100790257	protein MAIN-LIKE 1-like
gma-u.5	100778494	bromodomain-containing protein 4
gma-u.5	100777464	formin-like protein 3
sly-u.5	101257918	uncharacterized LOC101257918
sly-u.5	101249798	class E vacuolar protein-sorting machinery protein HSE1-like
bra-r.6	103850936	WW domain-binding protein 11
vvi-u.5	100250211	vegetative cell wall protein gp1
vvi-u.5	100264681	uncharacterized LOC100264681
ppo-u.5	7458044	uncharacterized LOC7458044
ppo-u.5	18105847	uncharacterized LOC18105847
ppo-u.5	18095317	uncharacterized LOC18095317
mtr-u.5	25495145	basic salivary proline-rich protein 1
mtr-u.5	25495144	putative uncharacterized protein DDB_G0294196
ghi-r.1	107944966	protein tfg-1
ghi-r.1	107926067	protein tfg-1
ghi-r.1	107911776	proline-rich protein 4
bna-r.1	106367214	WW domain-binding protein 11
sot-r.1	102603119	putative uncharacterized protein DDB_G0294196
sot-r.1	102600854	extensin-like
cit-r.1	102625691	protein transport protein sec31
cit-r.1	102612466	uncharacterized LOC102612466
nta-r.1	107785335	uncharacterized LOC107785335
nta-r.1	107777627	uncharacterized LOC107777627
nta-r.1	107779482	uncharacterized LOC107779482

Top 50 coexpressed genes to 8080940 (sbi-r.1 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 8080940 (sbi-r.1 coexpression data)

CoexMap"8080940"

[Cytoscape]

Annotation

functional annotation

KEGG

sbi00380 [list] [network] Tryptophan metabolism (58 genes)

sbi04075 [list] [network] Plant hormone signal transduction (389 genes)

GO BP

GO CC

GO MF

GO:0016846 [list] [network] carbon-sulfur lyase activity

(13 genes)

IEA

Protein

XP_021303239.1 [sequence] [blastp]

Subcellular
localization
wolf

pero 3, extr 2, nucl 1, E.R. 1, chlo 1, cyto 1, mito 1, chlo_mito 1, cysk_nucl 1, nucl_plas 1, E.R._vacu 1, E.R._plas 1

(predict for XP_021303239.1)

Subcellular
localization
TargetP

scret 4

(predict for XP_021303239.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	sbi-r.1 for 8080940	sbi-r.1 for 8078486	zma-u.5 for 100272723	zma-u.5 for 100281396	osa-u.5 for 4325199	osa-u.5 for 4337931	tae-r.2 for 123077284	tae-r.2 for 123180655	tae-r.2 for 123114312	hvu-r.1 for 123426597	hvu-r.1 for 123442805	bdi-r.1 for 100824075	bdi-r.1 for 100838076	ath-u.5 for AT3G01560	ath-u.5 for AT5G14540	gma-u.5 for 100790257	gma-u.5 for 100778494	gma-u.5 for 100777464	sly-u.5 for 101257918	sly-u.5 for 101249798	bra-r.6 for 103850936	vvi-u.5 for 100250211	vvi-u.5 for 100264681	ppo-u.5 for 7458044	ppo-u.5 for 18105847	ppo-u.5 for 18095317	mtr-u.5 for 25495145	mtr-u.5 for 25495144	ghi-r.1 for 107944966	ghi-r.1 for 107926067	ghi-r.1 for 107911776	bna-r.1 for 106367214	sot-r.1 for 102603119	sot-r.1 for 102600854	cit-r.1 for 102625691	cit-r.1 for 102612466	nta-r.1 for 107785335	nta-r.1 for 107777627	nta-r.1 for 107779482

Ortholog

Ortholog ID: 4242

Species

sbi

zma

osa

tae

hvu

bdi

ath

gma

sly

bra

vvi

ppo

mtr

ghi

bna

sot

cit

nta

Symbol

Function^*

uncharacterized LOC8080940

pollen-specific leucine-rich repeat extensin-like protein 2

uncharacterized LOC100272723

uncharacterized LOC100281396

protein transport protein sec31

actin cytoskeleton-regulatory complex protein PAN1

bromodomain-containing protein 4

proline-rich protein 36

tryptophan aminotransferase-related protein 2-like

pollen-specific leucine-rich repeat extensin-like protein 2

zyxin

uncharacterized LOC100838076

proline-rich receptor-like kinase, putative (DUF1421)

basic salivary proline-rich-like protein (DUF1421)

protein MAIN-LIKE 1-like

bromodomain-containing protein 4

formin-like protein 3

uncharacterized LOC101257918

class E vacuolar protein-sorting machinery protein HSE1-like

WW domain-binding protein 11

vegetative cell wall protein gp1

uncharacterized LOC100264681

uncharacterized LOC7458044

uncharacterized LOC18105847

uncharacterized LOC18095317

basic salivary proline-rich protein 1

putative uncharacterized protein DDB_G0294196

protein tfg-1

bromodomain-containing protein 4

WW domain-binding protein 11

putative uncharacterized protein DDB_G0294196

extensin-like

protein transport protein sec31

uncharacterized LOC102612466

uncharacterized LOC107785335

uncharacterized LOC107777627

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma04144	Endocytosis	2
zma03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma04120	Ubiquitin mediated proteolysis	3
zma04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa04120	Ubiquitin mediated proteolysis	2
osa04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae04141	Protein processing in endoplasmic reticulum	3
tae04144	Endocytosis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03022	Basal transcription factors	3
tae04144	Endocytosis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu04141	Protein processing in endoplasmic reticulum	2
hvu04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi00190	Oxidative phosphorylation	5
bdi00020	Citrate cycle (TCA cycle)	5
bdi01200	Carbon metabolism	5
bdi01210	2-Oxocarboxylic acid metabolism	4
bdi01230	Biosynthesis of amino acids	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi04075	Plant hormone signal transduction	3
bdi04016	MAPK signaling pathway - plant	2
bdi03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath04144	Endocytosis	3
ath03250	Viral life cycle - HIV-1	2
ath03272	Virion - Hepatitis viruses	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03410	Base excision repair	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi04144	Endocytosis	2
vvi03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03018	RNA degradation	2
ppo04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03022	Basal transcription factors	2
ghi03250	Viral life cycle - HIV-1	2
ghi03272	Virion - Hepatitis viruses	2
ghi04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna04141	Protein processing in endoplasmic reticulum	8
bna00620	Pyruvate metabolism	3
bna00710	Carbon fixation by Calvin cycle	3
bna01200	Carbon metabolism	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot04144	Endocytosis	3
sot03250	Viral life cycle - HIV-1	2
sot03272	Virion - Hepatitis viruses	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot04144	Endocytosis	3
sot03250	Viral life cycle - HIV-1	2
sot03272	Virion - Hepatitis viruses	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit04141	Protein processing in endoplasmic reticulum	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04141	Protein processing in endoplasmic reticulum	2

Expression

Expression pattern

Entrez Gene ID^*

8080940

8078486

100272723

100281396

4325199

4337931

123114312

123068779

123060272

123426597

123442805

100824075

100838076

821110

831305

100790257

100778494

100777464

101257918

101249798

103850936

100250211

100264681

7458044

18105847

18095317

25495145

25495144

107944966

107926067

107924256

106367214

102603119

102600854

102625691

102612466

107785335

107777627

The preparation time of this page was 0.1 [sec].


Species	sbi	zma	osa	tae	hvu	bdi	ath	gma	sly	bra	vvi	ppo	mtr	ghi	bna	sot	cit	nta	cre
Paralog	2	2	2	3	2	2	2	3	2	1	2	3	2	3	1	2	2	3	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 8080940 (sbi-r.1 coexpression data)

Top 50 enrichment test to 8080940 (sbi-r.1 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**