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Orthologous genes in OrthoFinder**

Species Gene Description
 sbi-r.1   8081332   phytochromobilin:ferredoxin oxidoreductase, chloroplastic 
 zma-u.5   542164   elongated mesocotyl 1 
 osa-u.5   4325761   phytochromobilin:ferredoxin oxidoreductase, chloroplastic 
 tae-r.2   123066605   phytochromobilin:ferredoxin oxidoreductase, chloroplastic 
 hvu-r.1   123445491   phytochromobilin:ferredoxin oxidoreductase, chloroplastic-like 
 bdi-r.1   100829998   phytochromobilin:ferredoxin oxidoreductase, chloroplastic 
 ath-u.5   HY2   phytochromobilin:ferredoxin oxidoreductase, chloroplast / phytochromobilin synthase (HY2) 
 gma-u.5   100791053   phytochromobilin:ferredoxin oxidoreductase, chloroplastic 
 sly-u.5   AUREA   phytochromobilin synthase 
 bra-r.6   103859309   phytochromobilin:ferredoxin oxidoreductase, chloroplastic 
 vvi-u.5   100267105   phytochromobilin:ferredoxin oxidoreductase, chloroplastic 
 ppo-u.5   7478520   phytochromobilin:ferredoxin oxidoreductase, chloroplastic 
 mtr-u.5   11434871   phytochromobilin:ferredoxin oxidoreductase, chloroplastic 
 ghi-r.1   107945135   phytochromobilin:ferredoxin oxidoreductase, chloroplastic 
 ghi-r.1   107939449   phytochromobilin:ferredoxin oxidoreductase, chloroplastic 
 bna-r.1   125587929   phytochromobilin:ferredoxin oxidoreductase, chloroplastic-like 
 bna-r.1   106439211   phytochromobilin:ferredoxin oxidoreductase, chloroplastic 
 bna-r.1   106352983   phytochromobilin:ferredoxin oxidoreductase, chloroplastic-like 
 sot-r.1   102604691   phytochromobilin:ferredoxin oxidoreductase, chloroplastic 
 cit-r.1   102609362   phytochromobilin:ferredoxin oxidoreductase, chloroplastic 
 nta-r.1   107823317   phytochromobilin:ferredoxin oxidoreductase, chloroplastic-like 
 nta-r.1   107761635   phytochromobilin:ferredoxin oxidoreductase, chloroplastic 

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Top 50 coexpressed genes to 8081332 (sbi-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 8081332 (sbi-r.1 coexpression data)

CoexMap"8081332"


sbiLOC8081332 | Entrez gene ID : 8081332      
Species sbi zma osa tae hvu bdi ath gma sly bra vvi ppo mtr ghi bna sot cit nta cre
Paralog 1 1 1 1 1 1 1 1 1 1 1 1 1 2 3 1 1 2 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG sbi00860 [list] [network] Porphyrin metabolism (54 genes)
GO BP
GO:0010024 [list] [network] phytochromobilin biosynthetic process  (4 genes)  IEA  
GO CC
GO MF
GO:0050619 [list] [network] phytochromobilin:ferredoxin oxidoreductase activity  (1 genes)  IEA  
GO:0050897 [list] [network] cobalt ion binding  (6 genes)  IEA  
Protein XP_002459096.1 [sequence] [blastp]
XP_021310894.1 [sequence] [blastp]
XP_021310895.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 4,  nucl 4,  mito 1,  extr 1  (predict for XP_002459096.1)
nucl 4,  nucl_plas 3,  chlo 1,  mito 1,  chlo_mito 1  (predict for XP_021310894.1)
nucl 5,  chlo 1,  cyto 1,  mito 1,  chlo_mito 1  (predict for XP_021310895.1)
Subcellular
localization
TargetP
mito 2  (predict for XP_002459096.1)
other 7  (predict for XP_021310894.1)
other 8  (predict for XP_021310895.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

sbi-r.1
for
8081332
zma-u.5
for
542164
osa-u.5
for
4325761
tae-r.2
for
123066605
hvu-r.1
for
123445491
bdi-r.1
for
100829998
ath-u.5
for
HY2
gma-u.5
for
100791053
sly-u.5
for
AUREA
bra-r.6
for
103859309
vvi-u.5
for
100267105
ppo-u.5
for
7478520
mtr-u.5
for
11434871
ghi-r.1
for
107945135
ghi-r.1
for
107939449
bna-r.1
for
125587929
bna-r.1
for
106439211
bna-r.1
for
106352983
sot-r.1
for
102604691
cit-r.1
for
102609362
nta-r.1
for
107823317
nta-r.1
for
107761635


Ortholog ID: 9461
Species sbi zma osa tae hvu bdi ath gma sly bra vvi ppo mtr ghi ghi bna bna bna sot cit nta nta
Symbol LOC8081332 LOC542164 LOC4325761 LOC123066605 LOC123445491 LOC100829998 HY2 LOC100791053 AUREA LOC103859309 LOC100267105 LOC7478520 LOC11434871 LOC107945135 LOC107939449 LOC125587929 LOC106439211 LOC106352983 LOC102604691 LOC102609362 LOC107823317 LOC107761635
Function* phytochromobilin:ferredoxin oxidoreductase, chloroplastic elongated mesocotyl 1 phytochromobilin:ferredoxin oxidoreductase, chloroplastic phytochromobilin:ferredoxin oxidoreductase, chloroplastic phytochromobilin:ferredoxin oxidoreductase, chloroplastic-like phytochromobilin:ferredoxin oxidoreductase, chloroplastic phytochromobilin:ferredoxin oxidoreductase, chloroplast / phytochromobilin synthase (HY2) phytochromobilin:ferredoxin oxidoreductase, chloroplastic phytochromobilin synthase phytochromobilin:ferredoxin oxidoreductase, chloroplastic phytochromobilin:ferredoxin oxidoreductase, chloroplastic phytochromobilin:ferredoxin oxidoreductase, chloroplastic phytochromobilin:ferredoxin oxidoreductase, chloroplastic phytochromobilin:ferredoxin oxidoreductase, chloroplastic phytochromobilin:ferredoxin oxidoreductase, chloroplastic phytochromobilin:ferredoxin oxidoreductase, chloroplastic-like phytochromobilin:ferredoxin oxidoreductase, chloroplastic phytochromobilin:ferredoxin oxidoreductase, chloroplastic-like phytochromobilin:ferredoxin oxidoreductase, chloroplastic phytochromobilin:ferredoxin oxidoreductase, chloroplastic phytochromobilin:ferredoxin oxidoreductase, chloroplastic-like phytochromobilin:ferredoxin oxidoreductase, chloroplastic
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00785 Lipoic acid metabolism 2
sbi01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00520 Amino sugar and nucleotide sugar metabolism 2
osa00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00860 Porphyrin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra01230 Biosynthesis of amino acids 3
bra00340 Histidine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00970 Aminoacyl-tRNA biosynthesis 4
ppo00860 Porphyrin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03060 Protein export 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00500 Starch and sucrose metabolism 7
ghi00520 Amino sugar and nucleotide sugar metabolism 4
ghi01250 Biosynthesis of nucleotide sugars 4
ghi00860 Porphyrin metabolism 2
ghi00300 Lysine biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03010 Ribosome 4
ghi00860 Porphyrin metabolism 2
ghi00310 Lysine degradation 2
ghi00500 Starch and sucrose metabolism 2
ghi00520 Amino sugar and nucleotide sugar metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03022 Basal transcription factors 4
bna03015 mRNA surveillance pathway 3
bna00860 Porphyrin metabolism 3
bna00230 Purine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00230 Purine metabolism 5
bna00860 Porphyrin metabolism 5
bna03022 Basal transcription factors 4
bna03015 mRNA surveillance pathway 3
bna01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03022 Basal transcription factors 4
bna03015 mRNA surveillance pathway 4
bna00860 Porphyrin metabolism 3
bna03013 Nucleocytoplasmic transport 2
bna03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00270 Cysteine and methionine metabolism 2
nta00330 Arginine and proline metabolism 2
nta00860 Porphyrin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00270 Cysteine and methionine metabolism 2
nta00330 Arginine and proline metabolism 2
nta00860 Porphyrin metabolism 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 8081332 542164 4325761 123066605 123445491 100829998 820069 100791053 778324 103859309 100267105 7478520 11434871 107945135 107939449 125587929 106439211 106352983 102604691 102609362 107823317 107761635
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