ATTED-II : GeneCoexpression result

Species	Gene	Description
zma-u.5	103639307	polyadenylate-binding protein 7
ath-u.5	PAB7	poly(A) binding protein 7
gma-u.5	100807057	polyadenylate-binding protein 7
gma-u.5	100804671	polyadenylate-binding protein 7
gma-u.5	100798828	polyadenylate-binding protein 7
sly-u.5	101248632	polyadenylate-binding protein 7-like
sly-u.5	101266448	polyadenylate-binding protein 7
vvi-u.5	100267544	polyadenylate-binding protein 7

functional annotation

KEGG

sbi03015 [list] [network] mRNA surveillance pathway (120 genes)

sbi03018 [list] [network] RNA degradation (112 genes)

GO BP

GO CC

GO:1990904 [list] [network] ribonucleoprotein complex

(562 genes)

IEA

GO MF

GO:0003723 [list] [network] RNA binding

(1243 genes)

IEA

Protein

XP_002468087.2 [sequence] [blastp]

Subcellular
localization
wolf

nucl 9, cyto 1, pero 1, cyto_pero 1

(predict for XP_002468087.2)

Subcellular
localization
TargetP

other 6, scret 3

(predict for XP_002468087.2)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	zma-u.5 for 103639307 .	ath-u.5 for PAB7 .	gma-u.5 for 100807057 .	gma-u.5 for 100804671 .	gma-u.5 for 100798828 .	sly-u.5 for 101248632 .	sly-u.5 for 101266448 .	vvi-u.5 for 100267544 .

Ortholog ID: 7947

Species

ath

gma

sly

zma

vvi

ghi

Symbol

PAB7

Function^*

poly(A) binding protein 7

polyadenylate-binding protein 7

polyadenylate-binding protein 7-like

polyadenylate-binding protein 7

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath04814	Motor proteins	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma04626	Plant-pathogen interaction	3
gma03015	mRNA surveillance pathway	2
gma03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma00740	Riboflavin metabolism	2
gma01240	Biosynthesis of cofactors	2
gma03015	mRNA surveillance pathway	2
gma03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly00010	Glycolysis / Gluconeogenesis	3
sly01200	Carbon metabolism	3
sly03018	RNA degradation	3
sly00020	Citrate cycle (TCA cycle)	2
sly00620	Pyruvate metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly00908	Zeatin biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03015	mRNA surveillance pathway	2
zma03018	RNA degradation	2
zma00500	Starch and sucrose metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi00941	Flavonoid biosynthesis	3
vvi03018	RNA degradation	2
vvi00400	Phenylalanine, tyrosine and tryptophan biosynthesis	2
vvi01230	Biosynthesis of amino acids	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00564	Glycerophospholipid metabolism	2
ghi00565	Ether lipid metabolism	2
ghi04144	Endocytosis	2
ghi03015	mRNA surveillance pathway	2
ghi03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00073	Cutin, suberine and wax biosynthesis	4
ghi03015	mRNA surveillance pathway	2
ghi03018	RNA degradation	2
ghi04120	Ubiquitin mediated proteolysis	2

Expression

Expression pattern

Entrez Gene ID^*

818238

100779547

100804671

101266448

101248632

103639307

100267544

107901740

107899510


Species	zma	ath	gma	sly	vvi	ppo	hvu	mtr	osa	sot	tae	nta	bra	cit	ghi	bna	bdi	sbi	cre
Paralog	1	1	3	2	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0

Select Species^**

Orthologous genes in OrthoFinder^**

Top 50 coexpressed genes to 103639307 (zma-u.5 coexpression data)

Top 50 enrichment test to 103639307 (zma-u.5 coexpression data)

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 103639307 (zma-u.5 coexpression data)

Top 50 enrichment test to 103639307 (zma-u.5 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**