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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-u.5   CDC48B   cell division cycle 48B 
 ath-r.7   CDC48B   cell division cycle 48B 
 ath-m.9   CDC48B   cell division cycle 48B 
 ath-e.2   CDC48B   cell division cycle 48B 
 ath-m.4.bio   CDC48B   cell division cycle 48B 
 ath-m.4.hor   CDC48B   cell division cycle 48B 
 ath-m.4.lig   CDC48B   cell division cycle 48B 
 ath-m.4.str   CDC48B   cell division cycle 48B 
 ath-m.4.tis   CDC48B   cell division cycle 48B 
 gma-u.5   100814288   cell division control protein 48 homolog B 
 vvi-u.5   100254300   cell division control protein 48 homolog B 
 ppo-u.5   18094046   cell division control protein 48 homolog B 
 mtr-u.5   11420147   cell division control protein 48 homolog B 
 mtr-u.5   11418100   cell division control protein 48 homolog B 
 sly-u.5   101266417   cell division control protein 48 homolog B 
 osa-u.5   4336296   cell division control protein 48 homolog B 
 osa-u.5   4338614   cell division control protein 48 homolog B-like 
 zma-u.5   100192818   cell division control protein 48 homolog B 

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Top 50 coexpressed genes to CDC48B (ath-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to CDC48B (ath-u.5 coexpression data)

CoexMap"814895"


athCDC48B | Entrez gene ID : 814895      
Species ath gma vvi ppo mtr sly osa zma bdi hvu bra cit bna sbi ghi sot nta cre tae
Paralog 9 1 1 1 2 1 2 1 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO CC
GO:0005635 [list] [network] nuclear envelope  (107 genes)  IDA  
GO:0005886 [list] [network] plasma membrane  (2598 genes)  ISM  
GO:0005739 [list] [network] mitochondrion  (4244 genes)  IDA  
GO MF
Protein NP_001325037.1 [sequence] [blastp]
NP_178463.1 [sequence] [blastp]
Subcellular
localization
wolf
cyto 7,  chlo 1,  pero 1  (predict for NP_001325037.1)
nucl 3,  cyto 2,  vacu 1,  E.R. 1,  cysk_nucl 1,  E.R._vacu 1,  cyto_plas 1  (predict for NP_178463.1)
Subcellular
localization
TargetP
other 9  (predict for NP_001325037.1)
other 9  (predict for NP_178463.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-u.5
for
CDC48B
ath-r.7
for
CDC48B
ath-m.9
for
CDC48B
ath-e.2
for
CDC48B
ath-m.4.bio
for
CDC48B
ath-m.4.hor
for
CDC48B
ath-m.4.lig
for
CDC48B
ath-m.4.str
for
CDC48B
ath-m.4.tis
for
CDC48B
gma-u.5
for
100814288
vvi-u.5
for
100254300
ppo-u.5
for
18094046
mtr-u.5
for
11420147
mtr-u.5
for
11418100
sly-u.5
for
101266417
osa-u.5
for
4336296
osa-u.5
for
4338614
zma-u.5
for
100192818


Ortholog ID: 8863
Species ath bra bna bna ghi ghi cit gma vvi ppo mtr mtr sly sot nta nta osa osa zma tae tae hvu sbi bdi cre
Symbol CDC48B LOC103839396 LOC106396674 LOC106426939 LOC107933019 LOC107930869 LOC102614951 LOC100814288 LOC100254300 LOC18094046 LOC11420147 LOC11418100 LOC101266417 LOC102593678 LOC107761728 LOC107775847 LOC4336296 LOC4338614 LOC100192818 LOC123045919 LOC123189670 LOC123427137 LOC8060208 LOC100828357 CHLRE_17g700300v5
Function* cell division cycle 48B cell division control protein 48 homolog B cell division control protein 48 homolog B-like cell division control protein 48 homolog B cell division control protein 48 homolog B cell division control protein 48 homolog B cell division control protein 48 homolog B cell division control protein 48 homolog B cell division control protein 48 homolog B cell division control protein 48 homolog B cell division control protein 48 homolog B cell division control protein 48 homolog B cell division control protein 48 homolog B cell division control protein 48 homolog B cell division control protein 48 homolog B cell division control protein 48 homolog B cell division control protein 48 homolog B cell division control protein 48 homolog B-like cell division control protein 48 homolog B cell division control protein 48 homolog B cell division control protein 48 homolog B cell division control protein 48 homolog B cell division control protein 48 homolog B cell division control protein 48 homolog B uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03018 RNA degradation 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03008 Ribosome biogenesis in eukaryotes 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00410 beta-Alanine metabolism 2
bna00640 Propanoate metabolism 2
bna04146 Peroxisome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03013 Nucleocytoplasmic transport 2
vvi03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr01240 Biosynthesis of cofactors 3
mtr00220 Arginine biosynthesis 2
mtr00240 Pyrimidine metabolism 2
mtr00250 Alanine, aspartate and glutamate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03008 Ribosome biogenesis in eukaryotes 3
mtr00940 Phenylpropanoid biosynthesis 2
mtr00941 Flavonoid biosynthesis 2
mtr00945 Stilbenoid, diarylheptanoid and gingerol biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03008 Ribosome biogenesis in eukaryotes 6
sly03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03008 Ribosome biogenesis in eukaryotes 5
tae03010 Ribosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03008 Ribosome biogenesis in eukaryotes 11
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu01240 Biosynthesis of cofactors 2
hvu03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03015 mRNA surveillance pathway 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 814895 103839396 106396674 106426939 107933019 107930869 102614951 100814288 100254300 18094046 11420147 11418100 101266417 102593678 107761728 107775847 4336296 4338614 100192818 123045919 123189670 123427137 8060208 100828357 5717313
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