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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-u.5   AMS   basic helix-loop-helix (bHLH) DNA-binding superfamily protein 
 ath-r.7   AMS   basic helix-loop-helix (bHLH) DNA-binding superfamily protein 
 ath-m.9   AMS   basic helix-loop-helix (bHLH) DNA-binding superfamily protein 
 ath-e.2   AMS   basic helix-loop-helix (bHLH) DNA-binding superfamily protein 
 ath-m.4.bio   AMS   basic helix-loop-helix (bHLH) DNA-binding superfamily protein 
 ath-m.4.hor   AMS   basic helix-loop-helix (bHLH) DNA-binding superfamily protein 
 ath-m.4.lig   AMS   basic helix-loop-helix (bHLH) DNA-binding superfamily protein 
 ath-m.4.str   AMS   basic helix-loop-helix (bHLH) DNA-binding superfamily protein 
 ath-m.4.tis   AMS   basic helix-loop-helix (bHLH) DNA-binding superfamily protein 
 sly-u.5   101253608   transcription factor ABORTED MICROSPORES 
 zma-u.5   100274330   uncharacterized LOC100274330 

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Top 50 coexpressed genes to AMS (ath-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to AMS (ath-u.5 coexpression data)

CoexMap"816194"


athAMS | Entrez gene ID : 816194      
Species ath sly zma tae mtr osa bdi vvi sbi ppo bna nta cre sot hvu ghi gma cit bra
Paralog 9 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0048658 [list] [network] anther wall tapetum development  (24 genes)  IMP  
GO:0009555 [list] [network] pollen development  (385 genes)  IGI IMP  
GO:0006355 [list] [network] regulation of DNA-templated transcription  (1618 genes)  TAS  
GO CC
GO:0005634 [list] [network] nucleus  (10367 genes)  IDA ISM  
GO MF
GO:0000978 [list] [network] RNA polymerase II cis-regulatory region sequence-specific DNA binding  (12 genes)  IDA  
GO:0003682 [list] [network] chromatin binding  (103 genes)  IDA  
GO:0003700 [list] [network] DNA-binding transcription factor activity  (1620 genes)  ISS  
GO:0005515 [list] [network] protein binding  (5363 genes)  IPI  
Protein NP_179283.2 [sequence] [blastp]
Subcellular
localization
wolf
nucl 10  (predict for NP_179283.2)
Subcellular
localization
TargetP
other 4,  mito 4  (predict for NP_179283.2)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-u.5
for
AMS

.
ath-r.7
for
AMS

.
ath-m.9
for
AMS

.
ath-e.2
for
AMS

.
ath-m.4.bio
for
AMS

.
ath-m.4.hor
for
AMS

.
ath-m.4.lig
for
AMS

.
ath-m.4.str
for
AMS

.
ath-m.4.tis
for
AMS

.
sly-u.5
for
101253608

.
zma-u.5
for
100274330

.


Ortholog ID: 6490
Species ath sly zma bra tae tae ghi ghi bna bna sot cit bdi bdi
Symbol AMS LOC101253608 LOC100274330 LOC103846021 LOC123130206 LOC123130208 LOC107932461 LOC107945067 LOC106428702 LOC106418318 LOC102598182 LOC102611911 LOC100843665 LOC100844277
Function* basic helix-loop-helix (bHLH) DNA-binding superfamily protein transcription factor ABORTED MICROSPORES uncharacterized LOC100274330 transcription factor ABORTED MICROSPORES transcription factor TDR transcription factor TDR transcription factor ABORTED MICROSPORES transcription factor ABORTED MICROSPORES transcription factor ABORTED MICROSPORES transcription factor ABORTED MICROSPORES transcription factor ABORTED MICROSPORES transcription factor ABORTED MICROSPORES transcription factor TDR transcription factor TDR
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00940 Phenylpropanoid biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03083 Polycomb repressive complex 2
sly04120 Ubiquitin mediated proteolysis 2
sly04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00940 Phenylpropanoid biosynthesis 3
bra00941 Flavonoid biosynthesis 2
bra00945 Stilbenoid, diarylheptanoid and gingerol biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00195 Photosynthesis 4
ghi00040 Pentose and glucuronate interconversions 2
ghi00073 Cutin, suberine and wax biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00195 Photosynthesis 4
ghi00040 Pentose and glucuronate interconversions 2
ghi00073 Cutin, suberine and wax biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04144 Endocytosis 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 816194 101253608 100274330 103846021 123130206 123130208 107932461 107945067 106428702 106418318 102598182 102611911 100843665 100844277
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