ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
ath-u.5	AT2G28310	trimethylguanosine synthase (DUF707)
ath-r.7	AT2G28310	trimethylguanosine synthase (DUF707)
ath-m.9	AT2G28310	trimethylguanosine synthase (DUF707)
ath-e.2	AT2G28310	trimethylguanosine synthase (DUF707)
ath-m.4.bio	AT2G28310	trimethylguanosine synthase (DUF707)
ath-m.4.hor	AT2G28310	trimethylguanosine synthase (DUF707)
ath-m.4.lig	AT2G28310	trimethylguanosine synthase (DUF707)
ath-m.4.str	AT2G28310	trimethylguanosine synthase (DUF707)
ath-m.4.tis	AT2G28310	trimethylguanosine synthase (DUF707)
ath-u.5	AT3G27470	lysine ketoglutarate reductase trans-splicing protein (DUF707)
ath-u.5	AT1G08040	trimethylguanosine synthase (DUF707)
ath-u.5	AT1G13000	transmembrane protein, putative (DUF707)
bra-r.6	103871966	uncharacterized LOC103871966
bra-r.6	103871548	uncharacterized LOC103871548
bra-r.6	103864879	uncharacterized LOC103864879
bna-r.1	111215072	uncharacterized LOC111215072
bna-r.1	BNAA09G02060D	uncharacterized BNAA09G02060D
bna-r.1	BNAC04G39640D	uncharacterized BNAC04G39640D
ghi-r.1	107914228	uncharacterized LOC107914228
ghi-r.1	107909709	uncharacterized LOC107909709
ghi-r.1	107897899	uncharacterized LOC107897899
cit-r.1	102621821	hypothetical protein
cit-r.1	102616998	hypothetical protein
gma-u.5	100778486	uncharacterized LOC100778486
gma-u.5	100776711	uncharacterized LOC100776711
gma-u.5	100785650	uncharacterized LOC100785650
vvi-u.5	100267242	uncharacterized LOC100267242
vvi-u.5	100264636	uncharacterized LOC100264636
vvi-u.5	100243914	uncharacterized LOC100243914
ppo-u.5	7473208	uncharacterized LOC7473208
ppo-u.5	7461310	uncharacterized LOC7461310
ppo-u.5	7477084	uncharacterized LOC7477084
mtr-u.5	25501853	uncharacterized LOC25501853
mtr-u.5	11422678	uncharacterized LOC11422678
sly-u.5	101246434	uncharacterized LOC101246434
sly-u.5	101259386	uncharacterized LOC101259386
sot-r.1	102598936	uncharacterized LOC102598936
sot-r.1	102584113	uncharacterized LOC102584113
nta-r.1	107816339	uncharacterized LOC107816339
nta-r.1	107803326	uncharacterized LOC107803326
nta-r.1	107797573	uncharacterized LOC107797573
osa-u.5	4323844	uncharacterized LOC4323844
osa-u.5	4337578	uncharacterized LOC4337578
zma-u.5	100193875	uncharacterized LOC100193875
zma-u.5	109944850	uncharacterized LOC109944850
zma-u.5	100284062	uncharacterized LOC100284062
tae-r.2	123071895	uncharacterized LOC123071895
tae-r.2	123063005	uncharacterized LOC123063005
tae-r.2	123063663	uncharacterized LOC123063663
hvu-r.1	123445164	uncharacterized LOC123445164
hvu-r.1	123438999	uncharacterized LOC123438999
hvu-r.1	123445674	uncharacterized LOC123445674
sbi-r.1	110434969	uncharacterized LOC110434969
sbi-r.1	110430350	uncharacterized LOC110430350
sbi-r.1	8078053	uncharacterized LOC8078053
bdi-r.1	100822631	uncharacterized LOC100822631
bdi-r.1	100831721	uncharacterized LOC100831721
bdi-r.1	100832535	uncharacterized LOC100832535

Top 50 coexpressed genes to AT2G28310 (ath-u.5 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to AT2G28310 (ath-u.5 coexpression data)

CoexMap"817377"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO CC

GO:0000138 [list] [network] Golgi trans cisterna	(87 genes)	HDA
GO:0005802 [list] [network] trans-Golgi network	(279 genes)	HDA
GO:0005768 [list] [network] endosome	(359 genes)	HDA
GO:0005794 [list] [network] Golgi apparatus	(1198 genes)	HDA
GO:0009507 [list] [network] chloroplast	(5014 genes)	ISM

GO MF

GO:0016757 [list] [network] glycosyltransferase activity

(554 genes)

ISM

Protein

NP_001154537.1 [sequence] [blastp]
NP_850118.1 [sequence] [blastp]
NP_850119.1 [sequence] [blastp]

Subcellular
localization
wolf

cyto 4, chlo 3, mito 1, plas 1, E.R. 1, golg 1, cyto_mito 1, golg_plas 1, E.R._plas 1	(predict for NP_001154537.1)
cyto 4, chlo 3, mito 1, plas 1, E.R. 1, golg 1, cyto_mito 1, golg_plas 1, E.R._plas 1	(predict for NP_850118.1)
cyto 4, chlo 3, mito 1, plas 1, E.R. 1, golg 1, cyto_mito 1, golg_plas 1, E.R._plas 1	(predict for NP_850119.1)

Subcellular
localization
TargetP

mito 5, other 4	(predict for NP_001154537.1)
mito 5, other 4	(predict for NP_850118.1)
mito 5, other 4	(predict for NP_850119.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target				Condition-specific^*					Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	ath-u.5 for AT2G28310	ath-r.7 for AT2G28310	ath-m.9 for AT2G28310	ath-e.2 for AT2G28310	ath-m.4.bio for AT2G28310	ath-m.4.hor for AT2G28310	ath-m.4.lig for AT2G28310	ath-m.4.str for AT2G28310	ath-m.4.tis for AT2G28310	ath-u.5 for AT3G27470	ath-u.5 for AT1G08040	ath-u.5 for AT1G13000	bra-r.6 for 103871966	bra-r.6 for 103871548	bra-r.6 for 103864879	bna-r.1 for 111215072	bna-r.1 for BNAA09G02060D	bna-r.1 for BNAC04G39640D	ghi-r.1 for 107914228	ghi-r.1 for 107909709	ghi-r.1 for 107897899	cit-r.1 for 102621821	cit-r.1 for 102616998	gma-u.5 for 100778486	gma-u.5 for 100776711	gma-u.5 for 100785650	vvi-u.5 for 100267242	vvi-u.5 for 100264636	vvi-u.5 for 100243914	ppo-u.5 for 7473208	ppo-u.5 for 7461310	ppo-u.5 for 7477084	mtr-u.5 for 25501853	mtr-u.5 for 11422678	sly-u.5 for 101246434	sly-u.5 for 101259386	sot-r.1 for 102598936	sot-r.1 for 102584113	nta-r.1 for 107816339	nta-r.1 for 107803326	nta-r.1 for 107797573	osa-u.5 for 4323844	osa-u.5 for 4337578	zma-u.5 for 100193875	zma-u.5 for 109944850	zma-u.5 for 100284062	tae-r.2 for 123071895	tae-r.2 for 123063005	tae-r.2 for 123063663	hvu-r.1 for 123445164	hvu-r.1 for 123438999	hvu-r.1 for 123445674	sbi-r.1 for 110434969	sbi-r.1 for 110430350	sbi-r.1 for 8078053	bdi-r.1 for 100822631	bdi-r.1 for 100831721	bdi-r.1 for 100832535

Ortholog

Ortholog ID: 721

Species

ath

bra

bna

ghi

cit

gma

vvi

ppo

mtr

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

Symbol

Function^*

lysine ketoglutarate reductase trans-splicing protein (DUF707)

trimethylguanosine synthase (DUF707)

lysine ketoglutarate reductase trans-splicing protein (DUF707)

uncharacterized LOC103871548

uncharacterized LOC103864879

uncharacterized BNAC04G39640D

uncharacterized LOC106411625

uncharacterized LOC106378875

uncharacterized LOC107897899

uncharacterized LOC107926047

uncharacterized LOC107946244

hypothetical protein

uncharacterized LOC100776711

uncharacterized LOC100811265

uncharacterized LOC100267242

uncharacterized LOC100264636

uncharacterized LOC100243914

uncharacterized LOC7473208

uncharacterized LOC7477084

uncharacterized LOC7491145

uncharacterized LOC25501853

uncharacterized LOC101261883

uncharacterized LOC101244185

uncharacterized LOC102598936

uncharacterized LOC107794437

uncharacterized LOC107759405

uncharacterized LOC107832343

uncharacterized LOC4323844

uncharacterized LOC4329082

uncharacterized LOC100193875

uncharacterized LOC109944850

lysine ketoglutarate reductase trans-splicing protein

uncharacterized LOC123072805

uncharacterized LOC123080972

uncharacterized LOC123080213

uncharacterized LOC123445164

uncharacterized LOC123438999

uncharacterized LOC123445674

uncharacterized LOC110434969

uncharacterized LOC110430350

uncharacterized LOC8056149

uncharacterized LOC100822631

uncharacterized LOC100831721

uncharacterized LOC100832535

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath00480	Glutathione metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra01250	Biosynthesis of nucleotide sugars	3
bra00541	Biosynthesis of various nucleotide sugars	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi04136	Autophagy - other	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi04136	Autophagy - other	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00563	Glycosylphosphatidylinositol (GPI)-anchor biosynthesis	2
ghi04144	Endocytosis	2
ghi03022	Basal transcription factors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma00860	Porphyrin metabolism	2
gma01240	Biosynthesis of cofactors	2
gma02010	ABC transporters	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi04141	Protein processing in endoplasmic reticulum	6
vvi04626	Plant-pathogen interaction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi00564	Glycerophospholipid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo01200	Carbon metabolism	4
ppo04141	Protein processing in endoplasmic reticulum	4
ppo03060	Protein export	3
ppo00030	Pentose phosphate pathway	2
ppo00480	Glutathione metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04144	Endocytosis	2
ppo00052	Galactose metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo00520	Amino sugar and nucleotide sugar metabolism	2
ppo01250	Biosynthesis of nucleotide sugars	2
ppo01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr04144	Endocytosis	3
mtr04141	Protein processing in endoplasmic reticulum	3
mtr03050	Proteasome	2
mtr04070	Phosphatidylinositol signaling system	2
mtr04626	Plant-pathogen interaction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot00330	Arginine and proline metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04144	Endocytosis	7
nta00280	Valine, leucine and isoleucine degradation	2
nta00410	beta-Alanine metabolism	2
nta00640	Propanoate metabolism	2
nta01200	Carbon metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04144	Endocytosis	4
nta00562	Inositol phosphate metabolism	2
nta04070	Phosphatidylinositol signaling system	2
nta00051	Fructose and mannose metabolism	2
nta00520	Amino sugar and nucleotide sugar metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa00510	N-Glycan biosynthesis	2
osa00513	Various types of N-glycan biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma04130	SNARE interactions in vesicular transport	2
zma00600	Sphingolipid metabolism	2
zma04382	Cornified envelope formation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma00250	Alanine, aspartate and glutamate metabolism	2
zma00650	Butanoate metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma00230	Purine metabolism	2
zma01232	Nucleotide metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03083	Polycomb repressive complex	3
tae03250	Viral life cycle - HIV-1	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00564	Glycerophospholipid metabolism	3
tae00565	Ether lipid metabolism	3
tae04144	Endocytosis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu04144	Endocytosis	3
hvu04142	Lysosome	2
hvu04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu04626	Plant-pathogen interaction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi04141	Protein processing in endoplasmic reticulum	2
sbi04145	Phagosome	2
sbi04148	Efferocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03020	RNA polymerase	2
sbi03420	Nucleotide excision repair	2
sbi00970	Aminoacyl-tRNA biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi04144	Endocytosis	7
bdi04626	Plant-pathogen interaction	2
bdi05100	Bacterial invasion of epithelial cells	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03050	Proteasome	10

Expression

Expression pattern

Entrez Gene ID^*

822368

837320

843111

103871548

103864879

106423863

106411625

106378875

107897899

107926047

107946244

102621821

102616998

100776711

100811265

100267242

100264636

100243914

7473208

7477084

7491145

25501853

101261883

101244185

102598936

107794437

107759405

107832343

4323844

4329082

100193875

109944850

100273464

123072805

123080972

123080213

123445164

123438999

123445674

110434969

110430350

8056149

100822631

100831721

100832535

The preparation time of this page was 0.2 [sec].


Species	ath	bra	bna	ghi	cit	gma	vvi	ppo	mtr	sly	sot	nta	osa	zma	tae	hvu	sbi	bdi	cre
Paralog	12	3	3	3	2	3	3	3	2	2	2	3	2	3	3	3	3	3	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to AT2G28310 (ath-u.5 coexpression data)

Top 50 enrichment test to AT2G28310 (ath-u.5 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**