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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-u.5   THIC   thiaminC 
 ath-r.7   THIC   thiaminC 
 ath-m.9   THIC   thiaminC 
 ath-e.2   THIC   thiaminC 
 ath-m.4.bio   THIC   thiaminC 
 ath-m.4.hor   THIC   thiaminC 
 ath-m.4.lig   THIC   thiaminC 
 ath-m.4.str   THIC   thiaminC 
 ath-m.4.tis   THIC   thiaminC 
 bra-r.6   103868019   phosphomethylpyrimidine synthase, chloroplastic 
 bna-r.1   106451520   phosphomethylpyrimidine synthase, chloroplastic 
 bna-r.1   106451517   phosphomethylpyrimidine synthase, chloroplastic 
 bna-r.1   125603549   phosphomethylpyrimidine synthase, chloroplastic 
 ghi-r.1   121202937   phosphomethylpyrimidine synthase, chloroplastic 
 ghi-r.1   121202913   phosphomethylpyrimidine synthase, chloroplastic 
 cit-r.1   102611329   phosphomethylpyrimidine synthase, chloroplastic 
 gma-u.5   100787350   phosphomethylpyrimidine synthase, chloroplastic 
 gma-u.5   100786478   phosphomethylpyrimidine synthase, chloroplastic 
 vvi-u.5   100250096   phosphomethylpyrimidine synthase, chloroplastic 
 ppo-u.5   18095058   phosphomethylpyrimidine synthase, chloroplastic 
 ppo-u.5   7468579   phosphomethylpyrimidine synthase, chloroplastic 
 mtr-u.5   25490810   phosphomethylpyrimidine synthase, chloroplastic 
 mtr-u.5   25490814   phosphomethylpyrimidine synthase, chloroplastic 
 sly-u.5   THIC   thiamine biosynthesis protein ThiC 
 sot-r.1   102594417   phosphomethylpyrimidine synthase, chloroplastic 
 nta-r.1   107782237   phosphomethylpyrimidine synthase, chloroplastic 
 nta-r.1   107810498   phosphomethylpyrimidine synthase, chloroplastic 
 osa-u.5   4333719   phosphomethylpyrimidine synthase, chloroplastic 
 zma-u.5   100285440   uncharacterized LOC100285440 
 tae-r.2   123087299   phosphomethylpyrimidine synthase, chloroplastic 
 tae-r.2   123090650   phosphomethylpyrimidine synthase, chloroplastic 
 tae-r.2   123095671   phosphomethylpyrimidine synthase, chloroplastic 
 hvu-r.1   123447067   phosphomethylpyrimidine synthase, chloroplastic 
 sbi-r.1   8056723   phosphomethylpyrimidine synthase, chloroplastic 
 bdi-r.1   100843013   phosphomethylpyrimidine synthase, chloroplastic 
 cre-r.1   CHLRE_05g240850v5   uncharacterized protein 

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Top 50 coexpressed genes to THIC (ath-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to THIC (ath-u.5 coexpression data)

CoexMap"817513"


athTHIC | Entrez gene ID : 817513      
Species ath bra bna ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 9 1 3 2 1 2 1 2 2 1 1 2 1 1 3 1 1 1 1
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG ath00730 [list] [network] Thiamine metabolism (21 genes)
ath01240 [list] [network] Biosynthesis of cofactors (237 genes)
GO BP
GO:0010266 [list] [network] response to vitamin B1  (2 genes)  IEP  
GO:0016045 [list] [network] detection of bacterium  (4 genes)  IMP  
GO:0009228 [list] [network] thiamine biosynthetic process  (5 genes)  IMP  
GO CC
GO:0009570 [list] [network] chloroplast stroma  (693 genes)  HDA IDA  
GO:0009507 [list] [network] chloroplast  (5014 genes)  HDA IDA ISM  
GO:0009536 [list] [network] plastid  (5443 genes)  IDA  
GO:0005737 [list] [network] cytoplasm  (14000 genes)  ISM  
GO MF
GO:0080041 [list] [network] ADP-ribose pyrophosphohydrolase activity  (3 genes)  IGI  
GO:0051536 [list] [network] iron-sulfur cluster binding  (13 genes)  IDA  
GO:0016830 [list] [network] carbon-carbon lyase activity  (89 genes)  IEA  
Protein NP_001189634.1 [sequence] [blastp]
NP_001325132.1 [sequence] [blastp]
NP_180524.1 [sequence] [blastp]
NP_850135.1 [sequence] [blastp]
Subcellular
localization
wolf
pero 4,  chlo 4,  cyto 1,  extr 1,  E.R. 1,  cyto_E.R. 1  (predict for NP_001189634.1)
cysk 6,  cyto 3,  cysk_nucl 3,  cysk_plas 3  (predict for NP_001325132.1)
pero 4,  chlo 4,  cyto 1,  extr 1,  E.R. 1,  cyto_E.R. 1  (predict for NP_180524.1)
pero 4,  chlo 4,  cyto 1,  extr 1,  E.R. 1,  cyto_E.R. 1  (predict for NP_850135.1)
Subcellular
localization
TargetP
chlo 9  (predict for NP_001189634.1)
other 7  (predict for NP_001325132.1)
chlo 9  (predict for NP_180524.1)
chlo 9  (predict for NP_850135.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-u.5
for
THIC
ath-r.7
for
THIC
ath-m.9
for
THIC
ath-e.2
for
THIC
ath-m.4.bio
for
THIC
ath-m.4.hor
for
THIC
ath-m.4.lig
for
THIC
ath-m.4.str
for
THIC
ath-m.4.tis
for
THIC
bra-r.6
for
103868019
bna-r.1
for
106451520
bna-r.1
for
106451517
bna-r.1
for
125603549
ghi-r.1
for
121202937
ghi-r.1
for
121202913
cit-r.1
for
102611329
gma-u.5
for
100787350
gma-u.5
for
100786478
vvi-u.5
for
100250096
ppo-u.5
for
18095058
ppo-u.5
for
7468579
mtr-u.5
for
25490810
mtr-u.5
for
25490814
sly-u.5
for
THIC
sot-r.1
for
102594417
nta-r.1
for
107782237
nta-r.1
for
107810498
osa-u.5
for
4333719
zma-u.5
for
100285440
tae-r.2
for
123087299
tae-r.2
for
123090650
tae-r.2
for
123095671
hvu-r.1
for
123447067
sbi-r.1
for
8056723
bdi-r.1
for
100843013
cre-r.1
for
CHLRE_05g240850v5


Ortholog ID: 8403
Species ath bra bna bna bna ghi ghi cit gma gma vvi ppo ppo mtr mtr sly sot nta nta osa zma tae tae tae hvu sbi bdi cre
Symbol THIC LOC103868019 LOC106451520 LOC106451517 LOC125603549 LOC121202937 LOC121202913 LOC102611329 LOC100787350 LOC100786478 LOC100250096 LOC18095058 LOC7468579 LOC25490810 LOC25490814 THIC LOC102594417 LOC107782237 LOC107810498 LOC4333719 LOC100285440 LOC123087299 LOC123090650 LOC123095671 LOC123447067 LOC8056723 LOC100843013 CHLRE_05g240850v5
Function* thiaminC phosphomethylpyrimidine synthase, chloroplastic phosphomethylpyrimidine synthase, chloroplastic phosphomethylpyrimidine synthase, chloroplastic phosphomethylpyrimidine synthase, chloroplastic phosphomethylpyrimidine synthase, chloroplastic phosphomethylpyrimidine synthase, chloroplastic phosphomethylpyrimidine synthase, chloroplastic phosphomethylpyrimidine synthase, chloroplastic phosphomethylpyrimidine synthase, chloroplastic phosphomethylpyrimidine synthase, chloroplastic phosphomethylpyrimidine synthase, chloroplastic phosphomethylpyrimidine synthase, chloroplastic phosphomethylpyrimidine synthase, chloroplastic phosphomethylpyrimidine synthase, chloroplastic thiamine biosynthesis protein ThiC phosphomethylpyrimidine synthase, chloroplastic phosphomethylpyrimidine synthase, chloroplastic phosphomethylpyrimidine synthase, chloroplastic phosphomethylpyrimidine synthase, chloroplastic uncharacterized LOC100285440 phosphomethylpyrimidine synthase, chloroplastic phosphomethylpyrimidine synthase, chloroplastic phosphomethylpyrimidine synthase, chloroplastic phosphomethylpyrimidine synthase, chloroplastic phosphomethylpyrimidine synthase, chloroplastic phosphomethylpyrimidine synthase, chloroplastic uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00500 Starch and sucrose metabolism 5
ath01240 Biosynthesis of cofactors 3
ath00730 Thiamine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00730 Thiamine metabolism 4
bra01240 Biosynthesis of cofactors 4
bra00500 Starch and sucrose metabolism 4
bra00710 Carbon fixation by Calvin cycle 2
bra01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00500 Starch and sucrose metabolism 4
bna00730 Thiamine metabolism 3
bna01240 Biosynthesis of cofactors 3
bna00520 Amino sugar and nucleotide sugar metabolism 2
bna01250 Biosynthesis of nucleotide sugars 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00500 Starch and sucrose metabolism 8
bna00730 Thiamine metabolism 3
bna01240 Biosynthesis of cofactors 3
bna00520 Amino sugar and nucleotide sugar metabolism 2
bna01250 Biosynthesis of nucleotide sugars 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00500 Starch and sucrose metabolism 4
bna00730 Thiamine metabolism 3
bna01240 Biosynthesis of cofactors 3
bna00520 Amino sugar and nucleotide sugar metabolism 2
bna01250 Biosynthesis of nucleotide sugars 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04712 Circadian rhythm - plant 2
ghi04120 Ubiquitin mediated proteolysis 2
ghi00730 Thiamine metabolism 2
ghi01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04712 Circadian rhythm - plant 2
ghi04120 Ubiquitin mediated proteolysis 2
ghi00730 Thiamine metabolism 2
ghi01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00730 Thiamine metabolism 6
gma01240 Biosynthesis of cofactors 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00730 Thiamine metabolism 6
gma01240 Biosynthesis of cofactors 6
gma00904 Diterpenoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00500 Starch and sucrose metabolism 5
vvi00730 Thiamine metabolism 3
vvi01240 Biosynthesis of cofactors 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00196 Photosynthesis - antenna proteins 4
ppo00195 Photosynthesis 3
ppo01240 Biosynthesis of cofactors 3
ppo00730 Thiamine metabolism 2
ppo00410 beta-Alanine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00195 Photosynthesis 4
ppo03010 Ribosome 2
ppo00730 Thiamine metabolism 2
ppo01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00730 Thiamine metabolism 2
mtr01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00500 Starch and sucrose metabolism 2
mtr00730 Thiamine metabolism 2
mtr01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04712 Circadian rhythm - plant 3
sly00730 Thiamine metabolism 2
sly01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00500 Starch and sucrose metabolism 6
sot00520 Amino sugar and nucleotide sugar metabolism 3
sot01250 Biosynthesis of nucleotide sugars 3
sot00730 Thiamine metabolism 2
sot01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00500 Starch and sucrose metabolism 6
nta04142 Lysosome 2
nta00730 Thiamine metabolism 2
nta01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00500 Starch and sucrose metabolism 5
nta00730 Thiamine metabolism 2
nta01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04712 Circadian rhythm - plant 3
osa00730 Thiamine metabolism 2
osa01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00500 Starch and sucrose metabolism 4
zma01240 Biosynthesis of cofactors 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00730 Thiamine metabolism 6
tae01240 Biosynthesis of cofactors 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00730 Thiamine metabolism 6
tae01240 Biosynthesis of cofactors 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00730 Thiamine metabolism 6
tae01240 Biosynthesis of cofactors 6
tae04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00730 Thiamine metabolism 2
hvu01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00730 Thiamine metabolism 3
sbi01240 Biosynthesis of cofactors 3
sbi04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00500 Starch and sucrose metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre01240 Biosynthesis of cofactors 3
cre00730 Thiamine metabolism 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 817513 103868019 106451520 106451517 125603549 121202937 121202913 102611329 100787350 100786478 100250096 18095058 7468579 25490810 25490814 101264726 102594417 107782237 107810498 4333719 100285440 123087299 123090650 123095671 123447067 8056723 100843013 5723262
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