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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-u.5   AT2G36480   pre-mRNA cleavage complex 2 Pcf11-like protein 
 ath-r.7   AT2G36480   pre-mRNA cleavage complex 2 Pcf11-like protein 
 ath-m.9   AT2G36480   pre-mRNA cleavage complex 2 Pcf11-like protein 
 ath-e.2   AT2G36480   pre-mRNA cleavage complex 2 Pcf11-like protein 
 ath-m.4.bio   AT2G36480   pre-mRNA cleavage complex 2 Pcf11-like protein 
 ath-m.4.hor   AT2G36480   pre-mRNA cleavage complex 2 Pcf11-like protein 
 ath-m.4.lig   AT2G36480   pre-mRNA cleavage complex 2 Pcf11-like protein 
 ath-m.4.str   AT2G36480   pre-mRNA cleavage complex 2 Pcf11-like protein 
 ath-m.4.tis   AT2G36480   pre-mRNA cleavage complex 2 Pcf11-like protein 
 gma-u.5   102662278   polyadenylation and cleavage factor homolog 4-like 
 gma-u.5   100788958   polyadenylation and cleavage factor homolog 4 
 gma-u.5   100807857   polyadenylation and cleavage factor homolog 4 
 vvi-u.5   100251089   polyadenylation and cleavage factor homolog 4 
 ppo-u.5   18100065   uncharacterized LOC18100065 
 mtr-u.5   11435271   uncharacterized LOC11435271 
 mtr-u.5   25483891   uncharacterized LOC25483891 
 sly-u.5   101246003   polyadenylation and cleavage factor homolog 4 
 sly-u.5   101244024   polyadenylation and cleavage factor homolog 4 
 osa-u.5   4347878   polyadenylation and cleavage factor homolog 4 
 zma-u.5   103647268   ENTH/VHS family protein 
 zma-u.5   103632446   ENTH/VHS family protein 

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Top 50 coexpressed genes to AT2G36480 (ath-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to AT2G36480 (ath-u.5 coexpression data)

CoexMap"818222"


athAT2G36480 | Entrez gene ID : 818222      
Species ath gma vvi ppo mtr sly osa zma nta bna tae bdi sot bra sbi hvu cit cre ghi
Paralog 9 3 1 1 2 2 1 2 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG ath03015 [list] [network] mRNA surveillance pathway (119 genes)
GO BP
GO CC
GO:0005634 [list] [network] nucleus  (10367 genes)  ISM  
GO MF
Protein NP_001318365.1 [sequence] [blastp]
NP_001318366.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 10  (predict for NP_001318365.1)
nucl 10  (predict for NP_001318366.1)
Subcellular
localization
TargetP
chlo 7,  other 4  (predict for NP_001318365.1)
chlo 7,  other 4  (predict for NP_001318366.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-u.5
for
AT2G36480

.
ath-r.7
for
AT2G36480

.
ath-m.9
for
AT2G36480

.
ath-e.2
for
AT2G36480

.
ath-m.4.bio
for
AT2G36480

.
ath-m.4.hor
for
AT2G36480

.
ath-m.4.lig
for
AT2G36480

.
ath-m.4.str
for
AT2G36480

.
ath-m.4.tis
for
AT2G36480

.
gma-u.5
for
102662278

.
gma-u.5
for
100788958

.
gma-u.5
for
100807857

.
vvi-u.5
for
100251089

.
ppo-u.5
for
18100065

.
mtr-u.5
for
11435271

.
mtr-u.5
for
25483891

.
sly-u.5
for
101246003

.
sly-u.5
for
101244024

.
osa-u.5
for
4347878

.
zma-u.5
for
103647268

.
zma-u.5
for
103632446

.


Ortholog ID: 6236
Species ath gma gma sly sly osa zma zma bra bra vvi ppo mtr mtr tae ghi ghi bna bna sbi sot sot cit nta nta
Symbol AT2G36480 LOC100811629 LOC102662278 LOC101246003 LOC101244024 LOC4347878 LOC103647268 LOC103632446 LOC103867279 LOC103865551 LOC100251089 LOC18100065 LOC11435271 LOC25483891 LOC123090547 LOC107921940 LOC107922273 LOC125609295 LOC106451108 LOC8061689 LOC102593629 LOC102597998 LOC102610910 LOC107795733 LOC107817412
Function* pre-mRNA cleavage complex 2 Pcf11-like protein polyadenylation and cleavage factor homolog 4 polyadenylation and cleavage factor homolog 4-like polyadenylation and cleavage factor homolog 4 polyadenylation and cleavage factor homolog 4 polyadenylation and cleavage factor homolog 4 ENTH/VHS family protein ENTH/VHS family protein polyadenylation and cleavage factor homolog 4 polyadenylation and cleavage factor homolog 4 polyadenylation and cleavage factor homolog 4 uncharacterized LOC18100065 uncharacterized LOC11435271 uncharacterized LOC25483891 polyadenylation and cleavage factor homolog 4 polyadenylation and cleavage factor homolog 4 polyadenylation and cleavage factor homolog 4 polyadenylation and cleavage factor homolog 4-like polyadenylation and cleavage factor homolog 4 uncharacterized LOC8061689 polyadenylation and cleavage factor homolog 4 uncharacterized LOC102597998 polyadenylation and cleavage factor homolog 4 polyadenylation and cleavage factor homolog 4 polyadenylation and cleavage factor homolog 4
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03015 mRNA surveillance pathway 3
gma03013 Nucleocytoplasmic transport 2
gma03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03015 mRNA surveillance pathway 3
gma04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04120 Ubiquitin mediated proteolysis 4
sly03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03015 mRNA surveillance pathway 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03015 mRNA surveillance pathway 3
zma03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03015 mRNA surveillance pathway 2
bra03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04120 Ubiquitin mediated proteolysis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03040 Spliceosome 5
tae03015 mRNA surveillance pathway 3
tae03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03015 mRNA surveillance pathway 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03015 mRNA surveillance pathway 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03015 mRNA surveillance pathway 5
bna03018 RNA degradation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03015 mRNA surveillance pathway 5
bna03018 RNA degradation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03040 Spliceosome 5
sot03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03013 Nucleocytoplasmic transport 2
cit03015 mRNA surveillance pathway 2
cit03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03015 mRNA surveillance pathway 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 818222 100811629 102662278 101246003 101244024 4347878 103647268 103632446 103867279 103865551 100251089 18100065 11435271 25483891 123090547 107921940 107922273 125609295 106451108 8061689 102593629 102597998 102610910 107795733 107817412
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