ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
ath-u.5	COI1	RNI-like superfamily protein
ath-r.7	COI1	RNI-like superfamily protein
ath-m.9	COI1	RNI-like superfamily protein
ath-e.2	COI1	RNI-like superfamily protein
ath-m.4.bio	COI1	RNI-like superfamily protein
ath-m.4.hor	COI1	RNI-like superfamily protein
ath-m.4.lig	COI1	RNI-like superfamily protein
ath-m.4.str	COI1	RNI-like superfamily protein
ath-m.4.tis	COI1	RNI-like superfamily protein
gma-u.5	100819069	coronatine-insensitive protein 1
gma-u.5	COI1	coronatine-insensitive 1
gma-u.5	100779171	coronatine-insensitive protein 1
vvi-u.5	100254771	coronatine-insensitive protein 1
ppo-u.5	7494475	coronatine-insensitive protein 1
ppo-u.5	7490347	coronatine-insensitive protein 1
mtr-u.5	11415803	coronatine-insensitive protein 1
mtr-u.5	11406671	coronatine-insensitive protein 1
sly-u.5	Coi1	coronatine-insensitive 1
osa-u.5	4338955	coronatine-insensitive protein homolog 1b-like
osa-u.5	4332349	coronatine-insensitive protein homolog 2-like
osa-u.5	4324818	coronatine-insensitive protein homolog 1a-like
zma-u.5	103638597	coronatine-insensitive protein homolog 2
zma-u.5	100383088	Coronatine-insensitive protein 1
zma-u.5	100382859	uncharacterized LOC100382859

Top 50 coexpressed genes to COI1 (ath-u.5 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to COI1 (ath-u.5 coexpression data)

CoexMap"818581"

[Cytoscape]

Annotation

functional annotation

KEGG

ath04075 [list] [network] Plant hormone signal transduction (433 genes)

GO BP

GO:0031146 [list] [network] SCF-dependent proteasomal ubiquitin-dependent protein catabolic process	(7 genes)	IMP
GO:0106167 [list] [network] extracellular ATP signaling	(8 genes)	IMP
GO:0009641 [list] [network] shade avoidance	(17 genes)	IMP
GO:0009861 [list] [network] jasmonic acid and ethylene-dependent systemic resistance	(18 genes)	TAS
GO:0009901 [list] [network] anther dehiscence	(21 genes)	IMP
GO:0010218 [list] [network] response to far red light	(57 genes)	IMP
GO:0010118 [list] [network] stomatal movement	(63 genes)	IMP
GO:0009625 [list] [network] response to insect	(66 genes)	IMP
GO:0009867 [list] [network] jasmonic acid mediated signaling pathway	(74 genes)	IGI TAS
GO:0031348 [list] [network] negative regulation of defense response	(78 genes)	IMP
GO:0048443 [list] [network] stamen development	(113 genes)	IMP
GO:0009909 [list] [network] regulation of flower development	(163 genes)	IMP
GO:0009753 [list] [network] response to jasmonic acid	(202 genes)	IMP
GO:0006511 [list] [network] ubiquitin-dependent protein catabolic process	(219 genes)	TAS
GO:0009611 [list] [network] response to wounding	(271 genes)	IMP
GO:0050832 [list] [network] defense response to fungus	(282 genes)	IMP
GO:0042742 [list] [network] defense response to bacterium	(363 genes)	IMP
GO:0048364 [list] [network] root development	(600 genes)	IMP
GO:0006952 [list] [network] defense response	(1016 genes)	TAS

GO CC

GO:0005737 [list] [network] cytoplasm

(14000 genes)

ISM

GO MF

GO:0005515 [list] [network] protein binding

(5363 genes)

IPI

Protein

NP_565919.1 [sequence] [blastp]

Subcellular
localization
wolf

cyto 8, nucl 1, mito 1, plas 1, nucl_plas 1, mito_plas 1

(predict for NP_565919.1)

Subcellular
localization
TargetP

other 9

(predict for NP_565919.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target				Condition-specific^*					Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	ath-u.5 for COI1	ath-r.7 for COI1	ath-m.9 for COI1	ath-e.2 for COI1	ath-m.4.bio for COI1	ath-m.4.hor for COI1	ath-m.4.lig for COI1	ath-m.4.str for COI1	ath-m.4.tis for COI1	gma-u.5 for 100819069	gma-u.5 for COI1	gma-u.5 for 100779171	vvi-u.5 for 100254771	ppo-u.5 for 7494475	ppo-u.5 for 7490347	mtr-u.5 for 11415803	mtr-u.5 for 11406671	sly-u.5 for Coi1	osa-u.5 for 4338955	osa-u.5 for 4332349	osa-u.5 for 4324818	zma-u.5 for 103638597	zma-u.5 for 100383088	zma-u.5 for 100382859

Ortholog

Ortholog ID: 2397

Species

ath

bra

bna

ghi

cit

gma

vvi

ppo

mtr

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

Symbol

COI1

Coi1

Function^*

RNI-like superfamily protein

coronatine-insensitive protein 1

coronatine-insensitive 1

coronatine-insensitive protein 1

coronatine-insensitive protein homolog 1b-like

coronatine-insensitive protein homolog 2-like

coronatine-insensitive protein homolog 2

Coronatine-insensitive protein 1

coronatine-insensitive protein homolog 1a

coronatine-insensitive protein homolog 2

coronatine-insensitive protein homolog 1b

coronatine-insensitive protein homolog 1a

coronatine-insensitive protein homolog 2

coronatine-insensitive protein homolog 1a

coronatine-insensitive protein homolog 1b

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath04075	Plant hormone signal transduction	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna04075	Plant hormone signal transduction	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna04075	Plant hormone signal transduction	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00561	Glycerolipid metabolism	2
ghi00564	Glycerophospholipid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03040	Spliceosome	2
gma00280	Valine, leucine and isoleucine degradation	2
gma04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma04075	Plant hormone signal transduction	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04075	Plant hormone signal transduction	3
ppo03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04075	Plant hormone signal transduction	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr04075	Plant hormone signal transduction	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr04075	Plant hormone signal transduction	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03015	mRNA surveillance pathway	3
sly00280	Valine, leucine and isoleucine degradation	2
sly00410	beta-Alanine metabolism	2
sly00640	Propanoate metabolism	2
sly01200	Carbon metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03050	Proteasome	7
nta04075	Plant hormone signal transduction	2
nta04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04075	Plant hormone signal transduction	2
nta00051	Fructose and mannose metabolism	2
nta00520	Amino sugar and nucleotide sugar metabolism	2
nta01240	Biosynthesis of cofactors	2
nta01250	Biosynthesis of nucleotide sugars	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa00500	Starch and sucrose metabolism	3
osa04075	Plant hormone signal transduction	2
osa03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa04712	Circadian rhythm - plant	3
osa04075	Plant hormone signal transduction	2
osa03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03015	mRNA surveillance pathway	2
zma04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma04075	Plant hormone signal transduction	6
zma04016	MAPK signaling pathway - plant	2
zma00562	Inositol phosphate metabolism	2
zma04070	Phosphatidylinositol signaling system	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae04075	Plant hormone signal transduction	7

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00562	Inositol phosphate metabolism	3
tae04070	Phosphatidylinositol signaling system	3
tae04075	Plant hormone signal transduction	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi04016	MAPK signaling pathway - plant	2
sbi04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi04075	Plant hormone signal transduction	2
bdi03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi04075	Plant hormone signal transduction	3

Expression

Expression pattern

Entrez Gene ID^*

818581

103866997

103865754

106391564

106391565

107910429

107955293

102620384

100819069

100779171

100254771

7490347

7494475

11406671

11415803

543911

102584101

107800594

107815229

4338955

4332349

103638597

100280173

100682512

123085381

123445823

123444868

8083719

8058923

100829997

100825916

The preparation time of this page was 0.1 [sec].


Species	ath	gma	vvi	ppo	mtr	sly	osa	zma	bdi	hvu	bra	cit	bna	sbi	ghi	sot	nta	cre	tae
Paralog	9	3	1	2	2	1	3	3	0	0	0	0	0	0	0	0	0	0	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to COI1 (ath-u.5 coexpression data)

Top 50 enrichment test to COI1 (ath-u.5 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**