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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-u.5   TRIP-1   TGF-beta receptor interacting protein 1 
 ath-r.7   TRIP-1   TGF-beta receptor interacting protein 1 
 ath-e.2   TRIP-1   TGF-beta receptor interacting protein 1 
 ath-u.5   AT2G46290   Transducin/WD40 repeat-like superfamily protein 
 gma-u.5   100819486   eukaryotic translation initiation factor 3 subunit I 
 gma-u.5   100793485   eukaryotic translation initiation factor 3 subunit I 
 gma-u.5   100781100   eukaryotic translation initiation factor 3 subunit I 
 vvi-u.5   100250769   eukaryotic translation initiation factor 3 subunit I 
 ppo-u.5   7471451   eukaryotic translation initiation factor 3 subunit I 
 mtr-u.5   11422623   eukaryotic translation initiation factor 3 subunit I 
 sly-u.5   101262979   eukaryotic translation initiation factor 3 subunit I 
 osa-u.5   4338229   eukaryotic translation initiation factor 3 subunit I 
 osa-u.5   4345234   eukaryotic translation initiation factor 3 subunit I 
 zma-u.5   103648258   eukaryotic translation initiation factor 3 subunit I 
 zma-u.5   100281110   eukaryotic translation initiation factor 3 subunit 2 
 zma-u.5   100280358   uncharacterized LOC100280358 

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Top 50 coexpressed genes to TRIP-1 (ath-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to TRIP-1 (ath-u.5 coexpression data)

CoexMap"819236"


athTRIP-1 | Entrez gene ID : 819236      
Species ath gma vvi ppo mtr sly osa zma sbi nta bra cre hvu cit bdi sot tae bna ghi
Paralog 4 3 1 1 1 1 2 3 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO CC
GO:0080008 [list] [network] Cul4-RING E3 ubiquitin ligase complex  (121 genes)  IPI  
GO:0005634 [list] [network] nucleus  (10367 genes)  ISM  
GO:0005737 [list] [network] cytoplasm  (14000 genes)  ISM  
GO MF
GO:0005515 [list] [network] protein binding  (5363 genes)  IPI  
Protein NP_182151.1 [sequence] [blastp]
NP_850450.1 [sequence] [blastp]
NP_973697.1 [sequence] [blastp]
Subcellular
localization
wolf
mito 4,  chlo 2,  cyto_mito 2,  cyto 1  (predict for NP_182151.1)
mito 4,  chlo 2,  cyto_mito 2,  cyto 1  (predict for NP_850450.1)
cyto 3,  mito 3,  chlo 2,  cyto_nucl 2  (predict for NP_973697.1)
Subcellular
localization
TargetP
mito 6,  other 5  (predict for NP_182151.1)
mito 6,  other 5  (predict for NP_850450.1)
mito 6,  other 5  (predict for NP_973697.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-u.5
for
TRIP-1

.
ath-r.7
for
TRIP-1

.
ath-e.2
for
TRIP-1

.
ath-u.5
for
AT2G46290

.
gma-u.5
for
100819486

.
gma-u.5
for
100793485

.
gma-u.5
for
100781100

.
vvi-u.5
for
100250769

.
ppo-u.5
for
7471451

.
mtr-u.5
for
11422623

.
sly-u.5
for
101262979

.
osa-u.5
for
4338229

.
osa-u.5
for
4345234

.
zma-u.5
for
103648258

.
zma-u.5
for
100281110

.
zma-u.5
for
100280358

.


Ortholog ID: 4892
Species ath gma gma sly osa osa zma zma bra bra vvi ppo mtr tae tae hvu ghi ghi bna bna cre cre sbi sot cit bdi nta nta
Symbol TRIP-1 LOC100819486 LOC100781100 LOC101262979 LOC4338229 LOC4345234 LOC103648258 LOC100281110 LOC103875217 LOC103854233 LOC100250769 LOC7471451 LOC11422623 LOC123092124 LOC101290669 LOC123448541 LOC107959041 LOC121203487 LOC106401815 LOC125597778 CHLRE_03g194400v5 CHLRE_01g032150v5 LOC8081165 LOC102592807 LOC102612031 LOC100841470 LOC107786562 LOC107831796
Function* TGF-beta receptor interacting protein 1 eukaryotic translation initiation factor 3 subunit I eukaryotic translation initiation factor 3 subunit I eukaryotic translation initiation factor 3 subunit I eukaryotic translation initiation factor 3 subunit I eukaryotic translation initiation factor 3 subunit I eukaryotic translation initiation factor 3 subunit I eukaryotic translation initiation factor 3 subunit 2 eukaryotic translation initiation factor 3 subunit I eukaryotic translation initiation factor 3 subunit I eukaryotic translation initiation factor 3 subunit I eukaryotic translation initiation factor 3 subunit I eukaryotic translation initiation factor 3 subunit I eukaryotic translation initiation factor 3 subunit I eukaryotic translation initiation factor 3 subunit I eukaryotic translation initiation factor 3 subunit I-like eukaryotic translation initiation factor 3 subunit I eukaryotic translation initiation factor 3 subunit I eukaryotic translation initiation factor 3 subunit I eukaryotic translation initiation factor 3 subunit I-like uncharacterized protein uncharacterized protein eukaryotic translation initiation factor 3 subunit I eukaryotic translation initiation factor 3 subunit I-like eukaryotic translation initiation factor 3 subunit I eukaryotic translation initiation factor 3 subunit I eukaryotic translation initiation factor 3 subunit I eukaryotic translation initiation factor 3 subunit I-like
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03010 Ribosome 12
gma03013 Nucleocytoplasmic transport 2
gma01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03010 Ribosome 13
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03013 Nucleocytoplasmic transport 3
sly03015 mRNA surveillance pathway 3
sly04626 Plant-pathogen interaction 2
sly03010 Ribosome 2
sly03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03010 Ribosome 6
osa03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03010 Ribosome 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03010 Ribosome 5
zma03008 Ribosome biogenesis in eukaryotes 3
zma00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03010 Ribosome 14
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03010 Ribosome 12
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03010 Ribosome 6
bra03013 Nucleocytoplasmic transport 5
bra03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03010 Ribosome 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03010 Ribosome 20
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03010 Ribosome 13
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00220 Arginine biosynthesis 3
tae00250 Alanine, aspartate and glutamate metabolism 3
tae01230 Biosynthesis of amino acids 3
tae04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04141 Protein processing in endoplasmic reticulum 2
tae03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03010 Ribosome 13
hvu03013 Nucleocytoplasmic transport 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03015 mRNA surveillance pathway 2
ghi03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03010 Ribosome 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03010 Ribosome 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre04814 Motor proteins 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03010 Ribosome 15
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03010 Ribosome 13
sot03013 Nucleocytoplasmic transport 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03008 Ribosome biogenesis in eukaryotes 4
cit04141 Protein processing in endoplasmic reticulum 2
cit03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03010 Ribosome 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03008 Ribosome biogenesis in eukaryotes 3
nta00260 Glycine, serine and threonine metabolism 2
nta00750 Vitamin B6 metabolism 2
nta01230 Biosynthesis of amino acids 2
nta00510 N-Glycan biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03008 Ribosome biogenesis in eukaryotes 3
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 819236 100819486 100781100 101262979 4338229 4345234 103648258 100281110 103875217 103854233 100250769 7471451 11422623 123092124 101290669 123448541 107959041 121203487 106401815 125597778 5718721 5715397 8081165 102592807 102612031 100841470 107786562 107831796
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