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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-u.5   RFI2   RING/U-box superfamily protein 
 ath-r.7   RFI2   RING/U-box superfamily protein 
 ath-m.9   RFI2   RING/U-box superfamily protein 
 ath-e.2   RFI2   RING/U-box superfamily protein 
 ath-m.4.bio   RFI2   RING/U-box superfamily protein 
 ath-m.4.hor   RFI2   RING/U-box superfamily protein 
 ath-m.4.lig   RFI2   RING/U-box superfamily protein 
 ath-m.4.str   RFI2   RING/U-box superfamily protein 
 ath-m.4.tis   RFI2   RING/U-box superfamily protein 

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Top 50 coexpressed genes to RFI2 (ath-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to RFI2 (ath-u.5 coexpression data)

CoexMap"819383"


athRFI2 | Entrez gene ID : 819383      
Species ath sly osa zma bna ghi gma sbi nta mtr cre bra cit vvi ppo hvu bdi sot tae
Paralog 9 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0090227 [list] [network] regulation of red or far-red light signaling pathway  (3 genes)  IMP  
GO:0010218 [list] [network] response to far red light  (57 genes)  IMP  
GO:0010114 [list] [network] response to red light  (73 genes)  IMP  
GO:2000028 [list] [network] regulation of photoperiodism, flowering  (101 genes)  IMP  
GO:0007623 [list] [network] circadian rhythm  (124 genes)  IEP  
GO:0010629 [list] [network] negative regulation of gene expression  (323 genes)  IMP  
GO:0010468 [list] [network] regulation of gene expression  (2062 genes)  IMP  
GO CC
GO:0005634 [list] [network] nucleus  (10367 genes)  IDA  
GO:0005737 [list] [network] cytoplasm  (14000 genes)  ISM  
GO MF
GO:0004842 [list] [network] ubiquitin-protein transferase activity  (268 genes)  IDA  
GO:0005515 [list] [network] protein binding  (5363 genes)  IPI  
Protein NP_001324431.1 [sequence] [blastp]
NP_850478.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 4,  mito 3,  chlo 2,  cysk_nucl 2,  nucl_plas 2  (predict for NP_001324431.1)
nucl 9,  mito 1,  plas 1,  mito_plas 1  (predict for NP_850478.1)
Subcellular
localization
TargetP
other 9  (predict for NP_001324431.1)
other 9  (predict for NP_850478.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-u.5
for
RFI2

.
ath-r.7
for
RFI2

.
ath-m.9
for
RFI2

.
ath-e.2
for
RFI2

.
ath-m.4.bio
for
RFI2

.
ath-m.4.hor
for
RFI2

.
ath-m.4.lig
for
RFI2

.
ath-m.4.str
for
RFI2

.
ath-m.4.tis
for
RFI2

.


Ortholog ID: 22589
Species ath bra bna bna
Symbol RFI2 LOC103866352 BNAC04G00170D LOC106450417
Function* RING/U-box superfamily protein E3 ubiquitin-protein ligase RFI2 E3 ubiquitin-protein ligase RFI2 E3 ubiquitin-protein ligase RFI2
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04075 Plant hormone signal transduction 2
ath04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03015 mRNA surveillance pathway 2
bra04382 Cornified envelope formation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04130 SNARE interactions in vesicular transport 7
Expression Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 819383 103866352 106396063 106450417
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