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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-u.5   Tic20-II   putative conserved protein ycf60 
 ath-r.7   Tic20-II   putative conserved protein ycf60 
 ath-m.9   Tic20-II   putative conserved protein ycf60 
 ath-e.2   Tic20-II   putative conserved protein ycf60 
 ath-m.4.bio   Tic20-II   putative conserved protein ycf60 
 ath-m.4.hor   Tic20-II   putative conserved protein ycf60 
 ath-m.4.lig   Tic20-II   putative conserved protein ycf60 
 ath-m.4.str   Tic20-II   putative conserved protein ycf60 
 ath-m.4.tis   Tic20-II   putative conserved protein ycf60 
 gma-u.5   100794929   protein TIC 20-II, chloroplastic 
 vvi-u.5   100249658   protein TIC 20-II, chloroplastic-like 
 ppo-u.5   18104228   protein TIC 20-II, chloroplastic 
 mtr-u.5   11442548   protein TIC 20-II, chloroplastic 
 sly-u.5   101257523   protein TIC 20-II, chloroplastic 

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Top 50 coexpressed genes to Tic20-II (ath-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to Tic20-II (ath-u.5 coexpression data)

CoexMap"819396"


athTic20-II | Entrez gene ID : 819396      
Species ath gma vvi ppo mtr sly tae osa hvu zma ghi bdi cit bra cre sbi bna nta sot
Paralog 9 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO CC
GO:0009706 [list] [network] chloroplast inner membrane  (66 genes)  IDA  
GO:0009941 [list] [network] chloroplast envelope  (585 genes)  HDA  
GO:0005829 [list] [network] cytosol  (2593 genes)  HDA  
GO:0009507 [list] [network] chloroplast  (5014 genes)  HDA ISM  
GO:0009536 [list] [network] plastid  (5443 genes)  HDA  
GO MF
Protein NP_566112.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 9  (predict for NP_566112.1)
Subcellular
localization
TargetP
chlo 9,  mito 3  (predict for NP_566112.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-u.5
for
Tic20-II

.
ath-r.7
for
Tic20-II

.
ath-m.9
for
Tic20-II

.
ath-e.2
for
Tic20-II

.
ath-m.4.bio
for
Tic20-II

.
ath-m.4.hor
for
Tic20-II

.
ath-m.4.lig
for
Tic20-II

.
ath-m.4.str
for
Tic20-II

.
ath-m.4.tis
for
Tic20-II

.
gma-u.5
for
100794929

.
vvi-u.5
for
100249658

.
ppo-u.5
for
18104228

.
mtr-u.5
for
11442548

.
sly-u.5
for
101257523

.


Ortholog ID: 13159
Species ath gma sly bra vvi ppo mtr ghi ghi bna bna cre sot cit nta
Symbol Tic20-II LOC100794929 LOC101257523 LOC103837085 LOC100249658 LOC18104228 LOC11442548 LOC121218679 LOC107960251 LOC106365902 LOC125593301 CHLRE_01g039150v5 LOC102595340 LOC102630959 LOC107759492
Function* putative conserved protein ycf60 protein TIC 20-II, chloroplastic protein TIC 20-II, chloroplastic protein TIC 20-II, chloroplastic protein TIC 20-II, chloroplastic-like protein TIC 20-II, chloroplastic protein TIC 20-II, chloroplastic protein TIC 20-II, chloroplastic protein TIC 20-II, chloroplastic protein TIC 20-II, chloroplastic protein TIC 20-II, chloroplastic uncharacterized protein protein TIC 20-II, chloroplastic protein TIC 20-II, chloroplastic protein TIC 20-II, chloroplastic-like
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00900 Terpenoid backbone biosynthesis 2
gma03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03010 Ribosome 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03010 Ribosome 4
vvi01230 Biosynthesis of amino acids 2
vvi00900 Terpenoid backbone biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo01240 Biosynthesis of cofactors 2
ppo00240 Pyrimidine metabolism 2
ppo01232 Nucleotide metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr01230 Biosynthesis of amino acids 4
mtr00290 Valine, leucine and isoleucine biosynthesis 3
mtr00650 Butanoate metabolism 3
mtr00660 C5-Branched dibasic acid metabolism 3
mtr00770 Pantothenate and CoA biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03060 Protein export 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03060 Protein export 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03040 Spliceosome 11
cre03013 Nucleocytoplasmic transport 3
cre03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03010 Ribosome 9
sot00260 Glycine, serine and threonine metabolism 3
sot00400 Phenylalanine, tyrosine and tryptophan biosynthesis 3
sot01230 Biosynthesis of amino acids 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit01210 2-Oxocarboxylic acid metabolism 3
cit01230 Biosynthesis of amino acids 3
cit03010 Ribosome 3
cit00290 Valine, leucine and isoleucine biosynthesis 2
cit00770 Pantothenate and CoA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03013 Nucleocytoplasmic transport 4
nta03020 RNA polymerase 2
nta03420 Nucleotide excision repair 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 819396 100794929 101257523 103837085 100249658 18104228 11442548 121218679 107960251 106365902 125593301 5715529 102595340 102630959 107759492
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