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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-u.5   RECQI1   RECQ helicase l1 
 ath-r.7   RECQI1   RECQ helicase l1 
 ath-m.9   RECQI1   RECQ helicase l1 
 ath-e.2   RECQI1   RECQ helicase l1 
 ath-m.4.bio   RECQI1   RECQ helicase l1 
 ath-m.4.hor   RECQI1   RECQ helicase l1 
 ath-m.4.lig   RECQI1   RECQ helicase l1 
 ath-m.4.str   RECQI1   RECQ helicase l1 
 ath-m.4.tis   RECQI1   RECQ helicase l1 
 gma-u.5   100806070   ATP-dependent DNA helicase Q-like 1 
 vvi-u.5   100252922   ATP-dependent DNA helicase Q-like 1 
 mtr-u.5   11408014   ATP-dependent DNA helicase Q-like 1 
 sly-u.5   101268516   ATP-dependent DNA helicase Q-like 1 
 zma-u.5   103652713   ATP-dependent DNA helicase Q-like 1 

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Top 50 coexpressed genes to RECQI1 (ath-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to RECQI1 (ath-u.5 coexpression data)

CoexMap"819743"


athRECQI1 | Entrez gene ID : 819743      
Species ath gma vvi mtr sly zma tae osa hvu ghi bdi cit bra cre sbi ppo bna nta sot
Paralog 9 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0070417 [list] [network] cellular response to cold  (38 genes)  IEP  
GO:0042631 [list] [network] cellular response to water deprivation  (41 genes)  IEP  
GO CC
GO:0005634 [list] [network] nucleus  (10367 genes)  ISM  
GO MF
Protein NP_001327100.1 [sequence] [blastp]
NP_187225.2 [sequence] [blastp]
Subcellular
localization
wolf
nucl 9,  cyto_nucl 5  (predict for NP_001327100.1)
nucl 9,  E.R. 1  (predict for NP_187225.2)
Subcellular
localization
TargetP
other 9  (predict for NP_001327100.1)
other 8  (predict for NP_187225.2)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-u.5
for
RECQI1

.
ath-r.7
for
RECQI1

.
ath-m.9
for
RECQI1

.
ath-e.2
for
RECQI1

.
ath-m.4.bio
for
RECQI1

.
ath-m.4.hor
for
RECQI1

.
ath-m.4.lig
for
RECQI1

.
ath-m.4.str
for
RECQI1

.
ath-m.4.tis
for
RECQI1

.
gma-u.5
for
100806070

.
vvi-u.5
for
100252922

.
mtr-u.5
for
11408014

.
sly-u.5
for
101268516

.
zma-u.5
for
103652713

.


Ortholog ID: 10734
Species ath gma sly zma bra vvi mtr tae tae hvu ghi ghi bna bna cre sot bdi nta nta
Symbol RECQI1 LOC100806070 LOC101268516 LOC103652713 LOC103870802 LOC100252922 LOC11408014 LOC123096845 LOC123086217 LOC123448388 LOC107927199 LOC107887081 LOC111213576 LOC106397655 CHLRE_03g178950v5 LOC102600231 LOC100824532 LOC107814297 LOC107793571
Function* RECQ helicase l1 ATP-dependent DNA helicase Q-like 1 ATP-dependent DNA helicase Q-like 1 ATP-dependent DNA helicase Q-like 1 ATP-dependent DNA helicase Q-like 1 ATP-dependent DNA helicase Q-like 1 ATP-dependent DNA helicase Q-like 1 ATP-dependent DNA helicase Q-like 1 ATP-dependent DNA helicase Q-like 1 ATP-dependent DNA helicase Q-like 1 ATP-dependent DNA helicase Q-like 1 ATP-dependent DNA helicase Q-like 1 ATP-dependent DNA helicase Q-like 1 ATP-dependent DNA helicase Q-like 1 uncharacterized protein ATP-dependent DNA helicase Q-like 1 ATP-dependent DNA helicase Q-like 1 ATP-dependent DNA helicase Q-like 1 ATP-dependent DNA helicase Q-like 1
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03030 DNA replication 11
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03030 DNA replication 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03030 DNA replication 11
sly03420 Nucleotide excision repair 2
sly03430 Mismatch repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03030 DNA replication 5
zma03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03030 DNA replication 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03440 Homologous recombination 3
mtr03460 Fanconi anemia pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03030 DNA replication 3
tae03410 Base excision repair 3
tae03420 Nucleotide excision repair 3
tae03430 Mismatch repair 3
tae03440 Homologous recombination 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03030 DNA replication 3
tae03410 Base excision repair 3
tae03420 Nucleotide excision repair 3
tae03430 Mismatch repair 3
tae03440 Homologous recombination 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03030 DNA replication 10
ghi03440 Homologous recombination 2
ghi03410 Base excision repair 2
ghi03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03030 DNA replication 11
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03030 DNA replication 9
sot03460 Fanconi anemia pathway 3
sot03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03030 DNA replication 7
bdi03430 Mismatch repair 2
bdi03440 Homologous recombination 2
bdi00270 Cysteine and methionine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03030 DNA replication 9
nta03460 Fanconi anemia pathway 4
nta03430 Mismatch repair 3
nta03420 Nucleotide excision repair 2
nta03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03030 DNA replication 9
nta03460 Fanconi anemia pathway 4
nta03430 Mismatch repair 3
nta03420 Nucleotide excision repair 2
nta03440 Homologous recombination 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 819743 100806070 101268516 103652713 103870802 100252922 11408014 123096845 123086217 123448388 107927199 107887081 111213576 106397655 5728811 102600231 100824532 107814297 107793571
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