ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
ath-u.5	AT3G09980	ankyrin repeat 30A-like protein (DUF662)
ath-r.7	AT3G09980	ankyrin repeat 30A-like protein (DUF662)
ath-m.9	AT3G09980	ankyrin repeat 30A-like protein (DUF662)
ath-e.2	AT3G09980	ankyrin repeat 30A-like protein (DUF662)
ath-m.4.bio	AT3G09980	ankyrin repeat 30A-like protein (DUF662)
ath-m.4.hor	AT3G09980	ankyrin repeat 30A-like protein (DUF662)
ath-m.4.lig	AT3G09980	ankyrin repeat 30A-like protein (DUF662)
ath-m.4.str	AT3G09980	ankyrin repeat 30A-like protein (DUF662)
ath-m.4.tis	AT3G09980	ankyrin repeat 30A-like protein (DUF662)
ath-u.5	AT2G27740	RAB6-interacting golgin (DUF662)
ath-u.5	AT2G36410	transcriptional activator (DUF662)
ath-u.5	AT3G52920	transcriptional activator (DUF662)
bra-r.6	103859274	syncoilin
bra-r.6	103829683	uncharacterized LOC103829683
bra-r.6	117132589	E3 ubiquitin-protein ligase BRE1A-like
bna-r.1	106447329	uncharacterized LOC106447329
bna-r.1	BNAC06G14260D	uncharacterized BNAC06G14260D
ghi-r.1	121206130	probable DNA double-strand break repair Rad50 ATPase
ghi-r.1	107953287	uncharacterized LOC107953287
ghi-r.1	107908710	probable DNA double-strand break repair Rad50 ATPase
cit-r.1	102614802	uncharacterized LOC102614802
cit-r.1	102615518	uncharacterized LOC102615518
gma-u.5	100499699	uncharacterized LOC100499699
gma-u.5	100499923	putative transcriptional activator
gma-u.5	100527015	uncharacterized LOC100527015
vvi-u.5	100243168	uncharacterized LOC100243168
vvi-u.5	100256294	uncharacterized LOC100256294
ppo-u.5	18097972	uncharacterized LOC18097972
ppo-u.5	18100064	uncharacterized LOC18100064
ppo-u.5	7478628	uncharacterized LOC7478628
mtr-u.5	11421495	uncharacterized LOC11421495
mtr-u.5	25487528	E3 ubiquitin-protein ligase BRE1A
sly-u.5	101267639	uncharacterized LOC101267639
sly-u.5	101262159	uncharacterized LOC101262159
sly-u.5	101249789	uncharacterized LOC101249789
sot-r.1	102599315	uncharacterized LOC102599315
sot-r.1	102594562	uncharacterized LOC102594562
sot-r.1	102590365	probable DNA double-strand break repair Rad50 ATPase
nta-r.1	107761164	uncharacterized LOC107761164
nta-r.1	107776972	uncharacterized LOC107776972
nta-r.1	107790708	uncharacterized LOC107790708
osa-u.5	4329531	uncharacterized LOC4329531
osa-u.5	4335760	uncharacterized LOC4335760
zma-u.5	100277048	uncharacterized LOC100277048
zma-u.5	100277929	uncharacterized LOC100277929
tae-r.2	100682484	uncharacterized LOC100682484
tae-r.2	123045382	uncharacterized LOC123045382
tae-r.2	123185455	uncharacterized LOC123185455
hvu-r.1	123426637	uncharacterized LOC123426637
sbi-r.1	8059620	uncharacterized LOC8059620
sbi-r.1	8072955	uncharacterized LOC8072955
bdi-r.1	100841661	uncharacterized LOC100841661
bdi-r.1	100830167	uncharacterized LOC100830167

Top 50 coexpressed genes to AT3G09980 (ath-u.5 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to AT3G09980 (ath-u.5 coexpression data)

CoexMap""

[Cytoscape]

Annotation

functional annotation

Function

ankyrin repeat 30A-like protein (DUF662)

KEGG

GO BP

GO:1900426 [list] [network] positive regulation of defense response to bacterium	(30 genes)	IMP
GO:0002218 [list] [network] activation of innate immune response	(56 genes)	IMP

GO CC

GO:0005829 [list] [network] cytosol	(2593 genes)	HDA
GO:0005886 [list] [network] plasma membrane	(2598 genes)	HDA
GO:0005634 [list] [network] nucleus	(10367 genes)	ISM

GO MF

GO:0008017 [list] [network] microtubule binding

(99 genes)

IDA

Protein

NP_187609.2 [sequence] [blastp]

Subcellular
localization
wolf

nucl 6, cyto 1, cysk 1, mito 1, extr 1, cyto_pero 1, cysk_plas 1, cyto_E.R. 1, cyto_plas 1

(predict for NP_187609.2)

Subcellular
localization
TargetP

chlo 4, other 3

(predict for NP_187609.2)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target				Condition-specific^*					Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	ath-u.5 for AT3G09980	ath-r.7 for AT3G09980	ath-m.9 for AT3G09980	ath-e.2 for AT3G09980	ath-m.4.bio for AT3G09980	ath-m.4.hor for AT3G09980	ath-m.4.lig for AT3G09980	ath-m.4.str for AT3G09980	ath-m.4.tis for AT3G09980	ath-u.5 for AT2G27740	ath-u.5 for AT2G36410	ath-u.5 for AT3G52920	bra-r.6 for 103859274	bra-r.6 for 103829683	bra-r.6 for 117132589	bna-r.1 for 106447329	bna-r.1 for BNAC06G14260D	ghi-r.1 for 121206130	ghi-r.1 for 107953287	ghi-r.1 for 107908710	cit-r.1 for 102614802	cit-r.1 for 102615518	gma-u.5 for 100499699	gma-u.5 for 100499923	gma-u.5 for 100527015	vvi-u.5 for 100243168	vvi-u.5 for 100256294	ppo-u.5 for 18097972	ppo-u.5 for 18100064	ppo-u.5 for 7478628	mtr-u.5 for 11421495	mtr-u.5 for 25487528	sly-u.5 for 101267639	sly-u.5 for 101262159	sly-u.5 for 101249789	sot-r.1 for 102599315	sot-r.1 for 102594562	sot-r.1 for 102590365	nta-r.1 for 107761164	nta-r.1 for 107776972	nta-r.1 for 107790708	osa-u.5 for 4329531	osa-u.5 for 4335760	zma-u.5 for 100277048	zma-u.5 for 100277929	tae-r.2 for 100682484	tae-r.2 for 123045382	tae-r.2 for 123185455	hvu-r.1 for 123426637	sbi-r.1 for 8059620	sbi-r.1 for 8072955	bdi-r.1 for 100841661	bdi-r.1 for 100830167

Please wait a moment.

Ortholog

Ortholog ID: 1099

Species

ath

bra

bna

ghi

cit

gma

vvi

ppo

mtr

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

Symbol

Function^*

transcriptional activator (DUF662)

E3 ubiquitin-protein ligase BRE1A-like

RNA-binding protein 25-like

syncoilin

uncharacterized LOC106437898

probable DNA double-strand break repair Rad50 ATPase

uncharacterized LOC102614802

uncharacterized LOC102615518

putative transcriptional activator

uncharacterized LOC100527015

uncharacterized LOC100796368

uncharacterized LOC100243168

uncharacterized LOC100256294

uncharacterized LOC18097972

uncharacterized LOC18100064

uncharacterized LOC7478628

uncharacterized LOC11421495

E3 ubiquitin-protein ligase BRE1A

uncharacterized LOC101267639

uncharacterized LOC101262159

uncharacterized LOC101249789

uncharacterized LOC102599315

uncharacterized LOC102594562

probable DNA double-strand break repair Rad50 ATPase

uncharacterized LOC107761164

uncharacterized LOC107799819

uncharacterized LOC107813131

uncharacterized LOC4329531

uncharacterized LOC4335760

uncharacterized LOC100277048

uncharacterized LOC100277929

uncharacterized LOC100682484

uncharacterized LOC123045382

uncharacterized LOC123185455

uncharacterized LOC123426637

uncharacterized LOC8059620

uncharacterized LOC8072955

uncharacterized LOC100841661

uncharacterized LOC100830167

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath04016	MAPK signaling pathway - plant	2
ath04070	Phosphatidylinositol signaling system	2
ath04075	Plant hormone signal transduction	2
ath04626	Plant-pathogen interaction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra00940	Phenylpropanoid biosynthesis	7
bra00360	Phenylalanine metabolism	3
bra00941	Flavonoid biosynthesis	3
bra00945	Stilbenoid, diarylheptanoid and gingerol biosynthesis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna00010	Glycolysis / Gluconeogenesis	3
bna00030	Pentose phosphate pathway	3
bna00051	Fructose and mannose metabolism	3
bna00052	Galactose metabolism	3
bna01200	Carbon metabolism	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma04075	Plant hormone signal transduction	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma04145	Phagosome	2
gma04148	Efferocytosis	2
gma04517	IgSF CAM signaling	2
gma04518	Integrin signaling	2
gma04620	Toll-like receptor signaling pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot00940	Phenylpropanoid biosynthesis	6
sot00941	Flavonoid biosynthesis	3
sot00945	Stilbenoid, diarylheptanoid and gingerol biosynthesis	3
sot00130	Ubiquinone and other terpenoid-quinone biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa00940	Phenylpropanoid biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03410	Base excision repair	2
zma00940	Phenylpropanoid biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03410	Base excision repair	2
hvu00941	Flavonoid biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi02010	ABC transporters	2

Expression

Expression pattern

Entrez Gene ID^*

818215

824458

831768

117132589

103858240

103870498

106439182

106437898

121206130

107908710

121220864

102614802

102615518

100499923

100527015

100796368

100243168

100256294

18097972

18100064

7478628

11421495

25487528

101267639

101262159

101249789

102599315

102594562

102590365

107761164

107799819

107813131

4329531

4335760

100277048

100277929

100682484

123045382

123185455

123426637

8059620

8072955

100841661

100830167

The preparation time of this page was 0.3 [sec].


Species	ath	bra	bna	ghi	cit	gma	vvi	ppo	mtr	sly	sot	nta	osa	zma	tae	hvu	sbi	bdi	cre
Paralog	12	3	2	3	2	3	2	3	2	3	3	3	2	2	3	1	2	2	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to AT3G09980 (ath-u.5 coexpression data)

Top 50 enrichment test to AT3G09980 (ath-u.5 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**