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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-u.5   DDI1   ubiquitin family protein 
 ath-r.7   DDI1   ubiquitin family protein 
 ath-m.9   DDI1   ubiquitin family protein 
 ath-e.2   DDI1   ubiquitin family protein 
 ath-m.4.bio   DDI1   ubiquitin family protein 
 ath-m.4.hor   DDI1   ubiquitin family protein 
 ath-m.4.lig   DDI1   ubiquitin family protein 
 ath-m.4.str   DDI1   ubiquitin family protein 
 ath-m.4.tis   DDI1   ubiquitin family protein 
 gma-u.5   100782198   DNA damage-inducible protein 1-like 
 gma-u.5   100779464   protein DNA-DAMAGE INDUCIBLE 1 
 vvi-u.5   100248128   protein DNA-DAMAGE INDUCIBLE 1 
 ppo-u.5   18103542   protein DNA-DAMAGE INDUCIBLE 1 
 ppo-u.5   7457658   protein DNA-DAMAGE INDUCIBLE 1 
 mtr-u.5   112420467   protein DNA-DAMAGE INDUCIBLE 1 
 sly-u.5   101055529   Hop-interacting protein THI111 
 osa-u.5   4328632   protein DNA-DAMAGE INDUCIBLE 1 
 zma-u.5   103654835   protein DNA-DAMAGE INDUCIBLE 1 

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Top 50 coexpressed genes to DDI1 (ath-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to DDI1 (ath-u.5 coexpression data)

CoexMap"820522"


athDDI1 | Entrez gene ID : 820522      
Species ath gma vvi ppo mtr sly osa zma tae hvu ghi bdi cit bra cre sbi bna nta sot
Paralog 9 2 1 2 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0006508 [list] [network] proteolysis  (361 genes)  IEA  
GO CC
GO:0005829 [list] [network] cytosol  (2593 genes)  HDA  
GO:0005737 [list] [network] cytoplasm  (14000 genes)  ISM  
GO MF
GO:0031593 [list] [network] polyubiquitin modification-dependent protein binding  (8 genes)  IDA  
GO:0004190 [list] [network] aspartic-type endopeptidase activity  (27 genes)  IEA  
Protein NP_001189876.1 [sequence] [blastp]
NP_001189877.1 [sequence] [blastp]
NP_566451.1 [sequence] [blastp]
Subcellular
localization
wolf
cyto 6,  chlo 4  (predict for NP_001189876.1)
cyto 6,  chlo 4  (predict for NP_001189877.1)
cyto 6,  chlo 4  (predict for NP_566451.1)
Subcellular
localization
TargetP
other 8  (predict for NP_001189876.1)
other 8  (predict for NP_001189877.1)
other 8  (predict for NP_566451.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-u.5
for
DDI1

.
ath-r.7
for
DDI1

.
ath-m.9
for
DDI1

.
ath-e.2
for
DDI1

.
ath-m.4.bio
for
DDI1

.
ath-m.4.hor
for
DDI1

.
ath-m.4.lig
for
DDI1

.
ath-m.4.str
for
DDI1

.
ath-m.4.tis
for
DDI1

.
gma-u.5
for
100782198

.
gma-u.5
for
100779464

.
vvi-u.5
for
100248128

.
ppo-u.5
for
18103542

.
ppo-u.5
for
7457658

.
mtr-u.5
for
112420467

.
sly-u.5
for
101055529

.
osa-u.5
for
4328632

.
zma-u.5
for
103654835

.


Ortholog ID: 7205
Species ath gma gma sly osa zma bra bra vvi ppo ppo mtr tae tae hvu ghi ghi bna bna cre sbi sot cit bdi nta nta
Symbol DDI1 LOC100782198 LOC100779464 LOC101055529 LOC4328632 LOC103654835 LOC103849757 LOC103859506 LOC100248128 LOC7457658 LOC18103542 LOC112420467 LOC123136690 LOC123132610 LOC123401728 LOC107895161 LOC107903408 LOC106377526 LOC106389111 CHLRE_10g447300v5 LOC8082906 LOC102603745 LOC102607231 LOC100830741 LOC107773217 LOC107788650
Function* ubiquitin family protein DNA damage-inducible protein 1-like protein DNA-DAMAGE INDUCIBLE 1 Hop-interacting protein THI111 protein DNA-DAMAGE INDUCIBLE 1 protein DNA-DAMAGE INDUCIBLE 1 protein DNA-DAMAGE INDUCIBLE 1 protein DNA-DAMAGE INDUCIBLE 1 protein DNA-DAMAGE INDUCIBLE 1 protein DNA-DAMAGE INDUCIBLE 1 protein DNA-DAMAGE INDUCIBLE 1 protein DNA-DAMAGE INDUCIBLE 1 protein DNA-DAMAGE INDUCIBLE 1 protein DNA-DAMAGE INDUCIBLE 1 protein DNA-DAMAGE INDUCIBLE 1 protein DNA-DAMAGE INDUCIBLE 1 protein DNA-DAMAGE INDUCIBLE 1 protein DNA-DAMAGE INDUCIBLE 1 protein DNA-DAMAGE INDUCIBLE 1 uncharacterized protein DNA damage-inducible protein 1 DNA damage-inducible protein 1 protein DNA-DAMAGE INDUCIBLE 1 DNA damage-inducible protein 1 protein DNA-DAMAGE INDUCIBLE 1-like protein DNA-DAMAGE INDUCIBLE 1
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03050 Proteasome 10
ath00970 Aminoacyl-tRNA biosynthesis 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03050 Proteasome 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03050 Proteasome 4
gma04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03050 Proteasome 9
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03050 Proteasome 13
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04141 Protein processing in endoplasmic reticulum 3
zma04142 Lysosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03040 Spliceosome 3
bra00230 Purine metabolism 2
bra03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00190 Oxidative phosphorylation 4
bra04141 Protein processing in endoplasmic reticulum 2
bra00020 Citrate cycle (TCA cycle) 2
bra00785 Lipoic acid metabolism 2
bra01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03040 Spliceosome 2
vvi03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03050 Proteasome 10
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00190 Oxidative phosphorylation 3
ppo04141 Protein processing in endoplasmic reticulum 3
ppo04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03050 Proteasome 11
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03050 Proteasome 4
tae04141 Protein processing in endoplasmic reticulum 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03050 Proteasome 8
tae04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03050 Proteasome 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04141 Protein processing in endoplasmic reticulum 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00062 Fatty acid elongation 6
ghi04626 Plant-pathogen interaction 6
ghi00620 Pyruvate metabolism 2
ghi00710 Carbon fixation by Calvin cycle 2
ghi01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre04141 Protein processing in endoplasmic reticulum 4
cre04120 Ubiquitin mediated proteolysis 4
cre03050 Proteasome 4
cre03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03050 Proteasome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00280 Valine, leucine and isoleucine degradation 2
cit01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04141 Protein processing in endoplasmic reticulum 4
nta00270 Cysteine and methionine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00020 Citrate cycle (TCA cycle) 3
nta01200 Carbon metabolism 3
nta01210 2-Oxocarboxylic acid metabolism 2
nta01230 Biosynthesis of amino acids 2
nta04016 MAPK signaling pathway - plant 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 820522 100782198 100779464 101055529 4328632 103654835 103849757 103859506 100248128 7457658 18103542 112420467 123136690 123132610 123401728 107895161 107903408 106377526 106389111 5723857 8082906 102603745 102607231 100830741 107773217 107788650
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