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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-u.5   AT3G16350   Homeodomain-like superfamily protein 
 ath-r.7   AT3G16350   Homeodomain-like superfamily protein 
 ath-m.9   AT3G16350   Homeodomain-like superfamily protein 
 ath-e.2   AT3G16350   Homeodomain-like superfamily protein 
 ath-m.4.bio   AT3G16350   Homeodomain-like superfamily protein 
 ath-m.4.hor   AT3G16350   Homeodomain-like superfamily protein 
 ath-m.4.lig   AT3G16350   Homeodomain-like superfamily protein 
 ath-m.4.str   AT3G16350   Homeodomain-like superfamily protein 
 ath-m.4.tis   AT3G16350   Homeodomain-like superfamily protein 
 gma-u.5   MYB52   MYB transcription factor MYB52 
 gma-u.5   MYB62   MYB transcription factor MYB62 
 vvi-u.5   100241227   transcription factor MYBS3 
 vvi-u.5   100256666   transcription factor MYBS3 
 ppo-u.5   18096826   transcription factor MYBS3 
 ppo-u.5   7470580   transcription factor MYBS3 
 mtr-u.5   11430671   transcription factor MYBS3 
 sly-u.5   101248552   transcription factor MYBS3 
 osa-u.5   4326766   transcription factor MYBS3-like 
 zma-u.5   100283600   myb-related transcription activator 

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Top 50 coexpressed genes to AT3G16350 (ath-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to AT3G16350 (ath-u.5 coexpression data)

CoexMap"820882"


athAT3G16350 | Entrez gene ID : 820882      
Species ath gma vvi ppo mtr sly osa zma hvu bna cit bra ghi sbi bdi nta tae cre sot
Paralog 9 2 2 2 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0080033 [list] [network] response to nitrite  (2 genes)  IMP  
GO:0006355 [list] [network] regulation of DNA-templated transcription  (1618 genes)  TAS  
GO CC
GO:0005634 [list] [network] nucleus  (10367 genes)  ISM  
GO MF
GO:0000987 [list] [network] cis-regulatory region sequence-specific DNA binding  (55 genes)  IDA IPI  
GO:0000976 [list] [network] transcription cis-regulatory region binding  (716 genes)  IPI  
GO:0003700 [list] [network] DNA-binding transcription factor activity  (1620 genes)  ISS  
Protein NP_188256.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 7,  chlo 1,  mito 1,  plas 1,  cysk 1,  chlo_mito 1,  cysk_plas 1,  mito_plas 1  (predict for NP_188256.1)
Subcellular
localization
TargetP
mito 4,  other 3  (predict for NP_188256.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-u.5
for
AT3G16350
ath-r.7
for
AT3G16350
ath-m.9
for
AT3G16350
ath-e.2
for
AT3G16350
ath-m.4.bio
for
AT3G16350
ath-m.4.hor
for
AT3G16350
ath-m.4.lig
for
AT3G16350
ath-m.4.str
for
AT3G16350
ath-m.4.tis
for
AT3G16350
gma-u.5
for
MYB52
gma-u.5
for
MYB62
vvi-u.5
for
100241227
vvi-u.5
for
100256666
ppo-u.5
for
18096826
ppo-u.5
for
7470580
mtr-u.5
for
11430671
sly-u.5
for
101248552
osa-u.5
for
4326766
zma-u.5
for
100283600


Ortholog ID: 8007
Species ath bra bna bna ghi ghi cit gma gma vvi vvi ppo ppo mtr sly sot nta osa zma tae tae hvu sbi bdi
Symbol AT3G16350 LOC103869829 LOC106444047 LOC106452135 LOC107906134 LOC107958432 LOC102609132 MYB52 MYB62 LOC100241227 LOC100256666 LOC18096826 LOC7470580 LOC11430671 LOC101248552 LOC102599100 LOC107804420 LOC4326766 LOC100283600 LOC123077446 LOC123060390 LOC123442916 LOC8084362 LOC100828575
Function* Homeodomain-like superfamily protein transcription factor MYBS3 transcription factor MYBS3-like transcription factor MYBS3-like transcription factor MYBS3 transcription factor MYBS3 transcription factor MYBS3 MYB transcription factor MYB52 MYB transcription factor MYB62 transcription factor MYBS3 transcription factor MYBS3 transcription factor MYBS3 transcription factor MYBS3 transcription factor MYBS3 transcription factor MYBS3 transcription factor MYB1R1 transcription factor MYBS3 transcription factor MYBS3-like myb-related transcription activator transcription factor MYBS3 transcription factor MYBS3 transcription factor MYBS3-like transcription factor MYBS3 transcription factor MYBS3
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00960 Tropane, piperidine and pyridine alkaloid biosynthesis 10
bna04075 Plant hormone signal transduction 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04075 Plant hormone signal transduction 7
bna00960 Tropane, piperidine and pyridine alkaloid biosynthesis 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00999 Biosynthesis of various plant secondary metabolites 2
ghi00130 Ubiquinone and other terpenoid-quinone biosynthesis 2
ghi00270 Cysteine and methionine metabolism 2
ghi00350 Tyrosine metabolism 2
ghi00360 Phenylalanine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00130 Ubiquinone and other terpenoid-quinone biosynthesis 2
ghi00270 Cysteine and methionine metabolism 2
ghi00350 Tyrosine metabolism 2
ghi00360 Phenylalanine metabolism 2
ghi00400 Phenylalanine, tyrosine and tryptophan biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit04075 Plant hormone signal transduction 3
cit04016 MAPK signaling pathway - plant 2
cit04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00500 Starch and sucrose metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo01240 Biosynthesis of cofactors 3
ppo00250 Alanine, aspartate and glutamate metabolism 2
ppo00760 Nicotinate and nicotinamide metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00564 Glycerophospholipid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00561 Glycerolipid metabolism 2
zma00564 Glycerophospholipid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00592 alpha-Linolenic acid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi04142 Lysosome 3
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 820882 103869829 106444047 106452135 107906134 107958432 102609132 778032 778036 100241227 100256666 18096826 7470580 11430671 101248552 102599100 107804420 4326766 100283600 123077446 123060390 123442916 8084362 100828575
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