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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-u.5   PRP40C   pre-mRNA-processing protein 40C 
 ath-r.7   PRP40C   pre-mRNA-processing protein 40C 
 ath-m.9   PRP40C   pre-mRNA-processing protein 40C 
 ath-e.2   PRP40C   pre-mRNA-processing protein 40C 
 ath-m.4.bio   PRP40C   pre-mRNA-processing protein 40C 
 ath-m.4.hor   PRP40C   pre-mRNA-processing protein 40C 
 ath-m.4.lig   PRP40C   pre-mRNA-processing protein 40C 
 ath-m.4.str   PRP40C   pre-mRNA-processing protein 40C 
 ath-m.4.tis   PRP40C   pre-mRNA-processing protein 40C 
 bra-r.6   103869415   pre-mRNA-processing protein 40C 
 bna-r.1   106415981   pre-mRNA-processing protein 40C-like 
 bna-r.1   106425155   pre-mRNA-processing protein 40C 
 bna-r.1   111215544   pre-mRNA-processing protein 40C-like 
 ghi-r.1   107918211   pre-mRNA-processing protein 40C 
 ghi-r.1   107922278   pre-mRNA-processing protein 40C 
 cit-r.1   102613774   pre-mRNA-processing protein 40C 
 gma-u.5   100816454   pre-mRNA-processing protein 40C 
 gma-u.5   100815386   pre-mRNA-processing protein 40C 
 gma-u.5   100806139   pre-mRNA-processing protein 40C 
 vvi-u.5   100254722   pre-mRNA-processing protein 40C 
 ppo-u.5   7498165   pre-mRNA-processing protein 40C 
 ppo-u.5   7481593   pre-mRNA-processing protein 40C 
 mtr-u.5   11443624   pre-mRNA-processing protein 40C 
 sly-u.5   101250296   pre-mRNA-processing protein 40C 
 sot-r.1   102602660   pre-mRNA-processing protein 40C 
 nta-r.1   107826384   pre-mRNA-processing protein 40C 
 nta-r.1   107801978   pre-mRNA-processing protein 40C 
 osa-u.5   4348939   pre-mRNA-processing protein 40C 
 zma-u.5   100304231   Pre-mRNA-processing protein 40C 
 tae-r.2   123121808   pre-mRNA-processing protein 40C 
 tae-r.2   123046373   pre-mRNA-processing protein 40C 
 tae-r.2   123181118   pre-mRNA-processing protein 40C 
 hvu-r.1   123431639   pre-mRNA-processing protein 40C 
 sbi-r.1   8067131   pre-mRNA-processing protein 40C 
 bdi-r.1   100837275   pre-mRNA-processing protein 40C 
 cre-r.1   CHLRE_09g393551v5   uncharacterized protein 

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Top 50 coexpressed genes to PRP40C (ath-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to PRP40C (ath-u.5 coexpression data)

CoexMap"821521"


athPRP40C | Entrez gene ID : 821521      
Species ath bra bna ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 9 1 3 2 1 3 1 2 1 1 1 2 1 1 3 1 1 1 1
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG ath03040 [list] [network] Spliceosome (243 genes)
GO BP
GO:0008380 [list] [network] RNA splicing  (195 genes)  IDA  
GO CC
GO:0005634 [list] [network] nucleus  (10367 genes)  ISM  
GO MF
GO:0070063 [list] [network] RNA polymerase binding  (7 genes)  IDA  
Protein NP_188618.3 [sequence] [blastp]
Subcellular
localization
wolf
nucl 10  (predict for NP_188618.3)
Subcellular
localization
TargetP
other 5,  chlo 5  (predict for NP_188618.3)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-u.5
for
PRP40C
ath-r.7
for
PRP40C
ath-m.9
for
PRP40C
ath-e.2
for
PRP40C
ath-m.4.bio
for
PRP40C
ath-m.4.hor
for
PRP40C
ath-m.4.lig
for
PRP40C
ath-m.4.str
for
PRP40C
ath-m.4.tis
for
PRP40C
bra-r.6
for
103869415
bna-r.1
for
106415981
bna-r.1
for
106425155
bna-r.1
for
111215544
ghi-r.1
for
107918211
ghi-r.1
for
107922278
cit-r.1
for
102613774
gma-u.5
for
100816454
gma-u.5
for
100815386
gma-u.5
for
100806139
vvi-u.5
for
100254722
ppo-u.5
for
7498165
ppo-u.5
for
7481593
mtr-u.5
for
11443624
sly-u.5
for
101250296
sot-r.1
for
102602660
nta-r.1
for
107826384
nta-r.1
for
107801978
osa-u.5
for
4348939
zma-u.5
for
100304231
tae-r.2
for
123121808
tae-r.2
for
123046373
tae-r.2
for
123181118
hvu-r.1
for
123431639
sbi-r.1
for
8067131
bdi-r.1
for
100837275
cre-r.1
for
CHLRE_09g393551v5


Ortholog ID: 8473
Species ath bra bna bna bna ghi ghi cit gma gma gma vvi ppo ppo mtr sly sot nta nta osa zma tae tae tae hvu sbi bdi cre
Symbol PRP40C LOC103869415 LOC106415981 LOC106425155 LOC111215544 LOC107918211 LOC107922278 LOC102613774 LOC100816454 LOC100815386 LOC100806139 LOC100254722 LOC7498165 LOC7481593 LOC11443624 LOC101250296 LOC102602660 LOC107826384 LOC107801978 LOC4348939 LOC100304231 LOC123121808 LOC123046373 LOC123181118 LOC123431639 LOC8067131 LOC100837275 CHLRE_09g393551v5
Function* pre-mRNA-processing protein 40C pre-mRNA-processing protein 40C pre-mRNA-processing protein 40C-like pre-mRNA-processing protein 40C pre-mRNA-processing protein 40C-like pre-mRNA-processing protein 40C pre-mRNA-processing protein 40C pre-mRNA-processing protein 40C pre-mRNA-processing protein 40C pre-mRNA-processing protein 40C pre-mRNA-processing protein 40C pre-mRNA-processing protein 40C pre-mRNA-processing protein 40C pre-mRNA-processing protein 40C pre-mRNA-processing protein 40C pre-mRNA-processing protein 40C pre-mRNA-processing protein 40C pre-mRNA-processing protein 40C pre-mRNA-processing protein 40C pre-mRNA-processing protein 40C Pre-mRNA-processing protein 40C pre-mRNA-processing protein 40C pre-mRNA-processing protein 40C pre-mRNA-processing protein 40C pre-mRNA-processing protein 40C pre-mRNA-processing protein 40C pre-mRNA-processing protein 40C uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03040 Spliceosome 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03040 Spliceosome 9
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03040 Spliceosome 9
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03040 Spliceosome 4
ghi03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03040 Spliceosome 4
ghi03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03040 Spliceosome 3
cit03018 RNA degradation 2
cit03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 3
gma03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03040 Spliceosome 3
vvi03015 mRNA surveillance pathway 2
vvi03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03015 mRNA surveillance pathway 3
ppo03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03040 Spliceosome 4
mtr03015 mRNA surveillance pathway 4
mtr03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03040 Spliceosome 3
sot03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04146 Peroxisome 2
nta03018 RNA degradation 2
nta03040 Spliceosome 2
nta03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 2
nta03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03040 Spliceosome 5
zma03013 Nucleocytoplasmic transport 2
zma03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03040 Spliceosome 9
tae03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03040 Spliceosome 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03040 Spliceosome 15
tae03013 Nucleocytoplasmic transport 5
tae04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03008 Ribosome biogenesis in eukaryotes 3
sbi03020 RNA polymerase 2
sbi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03013 Nucleocytoplasmic transport 3
bdi03040 Spliceosome 3
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 821521 103869415 106415981 106425155 111215544 107918211 107922278 102613774 100816454 100815386 100806139 100254722 7498165 7481593 11443624 101250296 102602660 107826384 107801978 4348939 100304231 123121808 123046373 123181118 123431639 8067131 100837275 5720117
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