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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-u.5   AT3G21100   RNA-binding (RRM/RBD/RNP motifs) family protein 
 ath-r.7   AT3G21100   RNA-binding (RRM/RBD/RNP motifs) family protein 
 ath-m.9   AT3G21100   RNA-binding (RRM/RBD/RNP motifs) family protein 
 ath-e.2   AT3G21100   RNA-binding (RRM/RBD/RNP motifs) family protein 
 ath-m.4.bio   AT3G21100   RNA-binding (RRM/RBD/RNP motifs) family protein 
 ath-m.4.hor   AT3G21100   RNA-binding (RRM/RBD/RNP motifs) family protein 
 ath-m.4.lig   AT3G21100   RNA-binding (RRM/RBD/RNP motifs) family protein 
 ath-m.4.str   AT3G21100   RNA-binding (RRM/RBD/RNP motifs) family protein 
 ath-m.4.tis   AT3G21100   RNA-binding (RRM/RBD/RNP motifs) family protein 
 bra-r.6   103835449   zinc finger CCCH domain-containing protein 55 
 bra-r.6   103869209   zinc finger CCCH domain-containing protein 55 
 bna-r.1   106345731   zinc finger CCCH domain-containing protein 55 
 bna-r.1   106406297   zinc finger CCCH domain-containing protein 55 
 bna-r.1   106421843   zinc finger CCCH domain-containing protein 55-like 

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Top 50 coexpressed genes to AT3G21100 (ath-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to AT3G21100 (ath-u.5 coexpression data)

CoexMap"821662"


athAT3G21100 | Entrez gene ID : 821662      
Species ath bra bna cre vvi ppo mtr hvu tae osa gma zma sly ghi cit sbi nta bdi sot
Paralog 9 2 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO CC
GO:0005634 [list] [network] nucleus  (10367 genes)  ISM  
GO MF
GO:0003723 [list] [network] RNA binding  (1764 genes)  IEA  
GO:0003676 [list] [network] nucleic acid binding  (3104 genes)  IEA  
Protein NP_001030738.1 [sequence] [blastp]
NP_001319604.1 [sequence] [blastp]
NP_001326865.1 [sequence] [blastp]
NP_001326866.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 10  (predict for NP_001030738.1)
nucl 10  (predict for NP_001319604.1)
nucl 10  (predict for NP_001326865.1)
nucl 10  (predict for NP_001326866.1)
Subcellular
localization
TargetP
other 9  (predict for NP_001030738.1)
other 9  (predict for NP_001319604.1)
other 9  (predict for NP_001326865.1)
other 9  (predict for NP_001326866.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-u.5
for
AT3G21100
ath-r.7
for
AT3G21100
ath-m.9
for
AT3G21100
ath-e.2
for
AT3G21100
ath-m.4.bio
for
AT3G21100
ath-m.4.hor
for
AT3G21100
ath-m.4.lig
for
AT3G21100
ath-m.4.str
for
AT3G21100
ath-m.4.tis
for
AT3G21100
bra-r.6
for
103835449
bra-r.6
for
103869209
bna-r.1
for
106345731
bna-r.1
for
106406297
bna-r.1
for
106421843


Ortholog ID: 16780
Species ath bra bra bna bna bna
Symbol AT3G21100 LOC103835449 LOC103869209 LOC106345731 LOC106421843 LOC125575192
Function* RNA-binding (RRM/RBD/RNP motifs) family protein zinc finger CCCH domain-containing protein 55 zinc finger CCCH domain-containing protein 55 zinc finger CCCH domain-containing protein 55 zinc finger CCCH domain-containing protein 55-like zinc finger CCCH domain-containing protein 55-like
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03008 Ribosome biogenesis in eukaryotes 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03030 DNA replication 3
bra03440 Homologous recombination 3
bra03420 Nucleotide excision repair 2
bra03460 Fanconi anemia pathway 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 821662 103835449 103869209 106345731 106421843 125575192
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