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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-u.5   AT3G22690   LOW protein: PPR containing-like protein 
 ath-r.7   AT3G22690   LOW protein: PPR containing-like protein 
 ath-m.9   AT3G22690   LOW protein: PPR containing-like protein 
 ath-e.2   AT3G22690   LOW protein: PPR containing-like protein 
 ath-m.4.bio   AT3G22690   LOW protein: PPR containing-like protein 
 ath-m.4.hor   AT3G22690   LOW protein: PPR containing-like protein 
 ath-m.4.lig   AT3G22690   LOW protein: PPR containing-like protein 
 ath-m.4.str   AT3G22690   LOW protein: PPR containing-like protein 
 ath-m.4.tis   AT3G22690   LOW protein: PPR containing-like protein 
 gma-u.5   100805041   pentatricopeptide repeat-containing protein At3g22690 
 vvi-u.5   100266544   pentatricopeptide repeat-containing protein At3g22690 
 mtr-u.5   11441453   pentatricopeptide repeat-containing protein At3g22690 
 sly-u.5   101252818   pentatricopeptide repeat-containing protein At3g22690 

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Top 50 coexpressed genes to AT3G22690 (ath-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to AT3G22690 (ath-u.5 coexpression data)

CoexMap"821840"


athAT3G22690 | Entrez gene ID : 821840      
Species ath gma vvi mtr sly ppo hvu osa sot tae nta bra cit ghi zma bna bdi sbi cre
Paralog 9 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0048564 [list] [network] photosystem I assembly  (17 genes)  IDA  
GO:0010380 [list] [network] regulation of chlorophyll biosynthetic process  (26 genes)  IEP  
GO:0010207 [list] [network] photosystem II assembly  (27 genes)  IDA  
GO:0010027 [list] [network] thylakoid membrane organization  (49 genes)  IMP  
GO:0009644 [list] [network] response to high light intensity  (71 genes)  IMP  
GO:0009451 [list] [network] RNA modification  (230 genes)  IMP  
GO:0009409 [list] [network] response to cold  (436 genes)  IMP  
GO CC
GO:0005739 [list] [network] mitochondrion  (4244 genes)  ISM  
GO:0009507 [list] [network] chloroplast  (5014 genes)  IDA  
GO MF
GO:0008270 [list] [network] zinc ion binding  (391 genes)  IEA  
Protein NP_001189950.1 [sequence] [blastp]
NP_001326902.1 [sequence] [blastp]
NP_188908.2 [sequence] [blastp]
Subcellular
localization
wolf
chlo 7,  extr 1,  cyto 1,  E.R. 1,  cyto_E.R. 1  (predict for NP_001189950.1)
chlo 7,  extr 1,  cyto 1,  E.R. 1,  cyto_E.R. 1  (predict for NP_001326902.1)
chlo 6,  nucl 1,  cyto 1,  extr 1,  vacu 1,  E.R. 1,  cyto_nucl 1,  E.R._vacu 1,  cyto_E.R. 1  (predict for NP_188908.2)
Subcellular
localization
TargetP
chlo 6  (predict for NP_001189950.1)
chlo 6  (predict for NP_001326902.1)
chlo 6  (predict for NP_188908.2)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-u.5
for
AT3G22690

.
ath-r.7
for
AT3G22690

.
ath-m.9
for
AT3G22690

.
ath-e.2
for
AT3G22690

.
ath-m.4.bio
for
AT3G22690

.
ath-m.4.hor
for
AT3G22690

.
ath-m.4.lig
for
AT3G22690

.
ath-m.4.str
for
AT3G22690

.
ath-m.4.tis
for
AT3G22690

.
gma-u.5
for
100805041

.
vvi-u.5
for
100266544

.
mtr-u.5
for
11441453

.
sly-u.5
for
101252818

.


Ortholog ID: 12901
Species ath gma sly bra vvi mtr ghi ghi bna bna sot cit nta nta
Symbol AT3G22690 LOC100805041 LOC101252818 LOC103869017 LOC100266544 LOC11441453 LOC107897695 LOC107914881 LOC106395409 LOC106451772 LOC102596707 LOC102617724 LOC107806740 LOC107759760
Function* LOW protein: PPR containing-like protein pentatricopeptide repeat-containing protein At3g22690 pentatricopeptide repeat-containing protein At3g22690 pentatricopeptide repeat-containing protein At3g22690 pentatricopeptide repeat-containing protein At3g22690 pentatricopeptide repeat-containing protein At3g22690 pentatricopeptide repeat-containing protein At3g22690 pentatricopeptide repeat-containing protein At3g22690 pentatricopeptide repeat-containing protein At3g22690-like pentatricopeptide repeat-containing protein At3g22690-like pentatricopeptide repeat-containing protein At3g22690-like pentatricopeptide repeat-containing protein At3g22690 pentatricopeptide repeat-containing protein At3g22690-like pentatricopeptide repeat-containing protein At3g22690-like
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00500 Starch and sucrose metabolism 2
nta04141 Protein processing in endoplasmic reticulum 2
nta04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04141 Protein processing in endoplasmic reticulum 2
nta04626 Plant-pathogen interaction 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 821840 100805041 101252818 103869017 100266544 11441453 107897695 107914881 106395409 106451772 102596707 102617724 107806740 107759760
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