ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
ath-u.5	IAA7	indole-3-acetic acid 7
ath-r.7	IAA7	indole-3-acetic acid 7
ath-m.9	IAA7	indole-3-acetic acid 7
ath-e.2	IAA7	indole-3-acetic acid 7
ath-m.4.bio	IAA7	indole-3-acetic acid 7
ath-m.4.hor	IAA7	indole-3-acetic acid 7
ath-m.4.lig	IAA7	indole-3-acetic acid 7
ath-m.4.str	IAA7	indole-3-acetic acid 7
ath-m.4.tis	IAA7	indole-3-acetic acid 7
ath-u.5	AXR3	AUX/IAA transcriptional regulator family protein
ath-u.5	IAA14	indole-3-acetic acid inducible 14
ath-u.5	IAA16	indoleacetic acid-induced protein 16
bra-r.6	103859990	auxin-responsive protein IAA7
bra-r.6	103849138	auxin-responsive protein IAA16
bra-r.6	103833444	auxin-responsive protein IAA14
bna-r.1	106451788	auxin-responsive protein IAA7
bna-r.1	106397047	auxin-responsive protein IAA17
bna-r.1	106370934	auxin-responsive protein IAA17
ghi-r.1	121202822	auxin-responsive protein IAA14
ghi-r.1	107922883	auxin-induced protein AUX28
ghi-r.1	107924370	auxin-induced protein AUX28
cit-r.1	102607251	auxin-induced protein AUX28-like
cit-r.1	102613119	auxin-responsive protein IAA14
cit-r.1	102617550	auxin-responsive protein IAA16
gma-u.5	100796888	auxin-responsive protein IAA16
gma-u.5	100803065	auxin-induced protein AUX28-like
gma-u.5	100499872	AUX/IAA family protein
vvi-u.5	100254530	auxin-responsive protein IAA14
vvi-u.5	100259693	auxin-responsive protein IAA16
vvi-u.5	100250231	indole-3-acetic acid-induced protein 16
ppo-u.5	7498041	auxin-responsive protein IAA14
ppo-u.5	7474609	auxin-responsive protein IAA16
ppo-u.5	7454323	auxin-induced protein AUX28
mtr-u.5	11420300	auxin-responsive protein IAA14
mtr-u.5	25499197	auxin-induced protein AUX28
mtr-u.5	25484639	auxin-responsive protein IAA16
sly-u.5	IAA16	auxin-responsive protein IAA16
sly-u.5	IAA17	auxin-responsive protein IAA17
sly-u.5	IAA7	IAA7 protein
sot-r.1	IAA3	auxin/indole-3-acetic acid 3
sot-r.1	IAA2	auxin-responsive protein IAA14-like
sot-r.1	102587812	auxin-responsive protein IAA16-like
nta-r.1	107830653	auxin-responsive protein IAA14
nta-r.1	107815530	auxin-responsive protein IAA14-like
osa-u.5	4333511	auxin-responsive protein IAA11
osa-u.5	4352721	auxin-responsive protein IAA30-like
zma-u.5	100284259	uncharacterized LOC100284259
tae-r.2	123102313	auxin-responsive protein IAA30
tae-r.2	123104942	auxin-responsive protein IAA30
tae-r.2	123110437	auxin-responsive protein IAA30
hvu-r.1	123452146	auxin-responsive protein IAA30-like
hvu-r.1	123395806	auxin-responsive protein IAA30-like
sbi-r.1	8062473	auxin-responsive protein IAA30
sbi-r.1	8070109	auxin-responsive protein IAA30
bdi-r.1	100833839	auxin-responsive protein IAA30

Top 50 coexpressed genes to IAA7 (ath-u.5 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to IAA7 (ath-u.5 coexpression data)

CoexMap"821879"

[Cytoscape]

Annotation

functional annotation

KEGG

ath04075 [list] [network] Plant hormone signal transduction (433 genes)

GO BP

GO:0009630 [list] [network] gravitropism	(101 genes)	IMP
GO:0009753 [list] [network] response to jasmonic acid	(202 genes)	IEP
GO:0009611 [list] [network] response to wounding	(271 genes)	IEP
GO:0009733 [list] [network] response to auxin	(344 genes)	TAS
GO:0009414 [list] [network] response to water deprivation	(426 genes)	IMP
GO:0006355 [list] [network] regulation of DNA-templated transcription	(1618 genes)	IEA

GO CC

GO:0005634 [list] [network] nucleus

(10367 genes)

IDA ISM

GO MF

GO:0000976 [list] [network] transcription cis-regulatory region binding	(716 genes)	IPI
GO:0003700 [list] [network] DNA-binding transcription factor activity	(1620 genes)	ISS
GO:0005515 [list] [network] protein binding	(5363 genes)	IPI

Protein

NP_001326465.1 [sequence] [blastp]
NP_188945.1 [sequence] [blastp]
NP_974355.1 [sequence] [blastp]

Subcellular
localization
wolf

chlo 8, nucl 1, mito 1, plas 1, nucl_plas 1, mito_plas 1	(predict for NP_001326465.1)
chlo 8, nucl 2	(predict for NP_188945.1)
chlo 8, nucl 1	(predict for NP_974355.1)

Subcellular
localization
TargetP

other 5	(predict for NP_001326465.1)
other 5	(predict for NP_188945.1)
other 5	(predict for NP_974355.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target				Condition-specific^*					Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	ath-u.5 for IAA7	ath-r.7 for IAA7	ath-m.9 for IAA7	ath-e.2 for IAA7	ath-m.4.bio for IAA7	ath-m.4.hor for IAA7	ath-m.4.lig for IAA7	ath-m.4.str for IAA7	ath-m.4.tis for IAA7	ath-u.5 for AXR3	ath-u.5 for IAA14	ath-u.5 for IAA16	bra-r.6 for 103859990	bra-r.6 for 103849138	bra-r.6 for 103833444	bna-r.1 for 106451788	bna-r.1 for 106397047	bna-r.1 for 106370934	ghi-r.1 for 121202822	ghi-r.1 for 107922883	ghi-r.1 for 107924370	cit-r.1 for 102607251	cit-r.1 for 102613119	cit-r.1 for 102617550	gma-u.5 for 100796888	gma-u.5 for 100803065	gma-u.5 for 100499872	vvi-u.5 for 100254530	vvi-u.5 for 100259693	vvi-u.5 for 100250231	ppo-u.5 for 7498041	ppo-u.5 for 7474609	ppo-u.5 for 7454323	mtr-u.5 for 11420300	mtr-u.5 for 25499197	mtr-u.5 for 25484639	sly-u.5 for IAA16	sly-u.5 for IAA17	sly-u.5 for IAA7	sot-r.1 for IAA3	sot-r.1 for IAA2	sot-r.1 for 102587812	nta-r.1 for 107830653	nta-r.1 for 107815530	osa-u.5 for 4333511	osa-u.5 for 4352721	zma-u.5 for 100284259	tae-r.2 for 123102313	tae-r.2 for 123104942	tae-r.2 for 123110437	hvu-r.1 for 123452146	hvu-r.1 for 123395806	sbi-r.1 for 8062473	sbi-r.1 for 8070109	bdi-r.1 for 100833839

Ortholog

Ortholog ID: 983

Species

ath

bra

bna

ghi

cit

gma

vvi

ppo

mtr

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

Symbol

IAA7

AXR3

IAA16

IAA16

IAA17

IAA7

IAA2

Function^*

indole-3-acetic acid 7

AUX/IAA transcriptional regulator family protein

indoleacetic acid-induced protein 16

auxin-responsive protein IAA7