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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-u.5   CLE41   CLAVATA3/ESR-RELATED 41 
 ath-r.7   CLE41   CLAVATA3/ESR-RELATED 41 
 ath-m.9   CLE41   CLAVATA3/ESR-RELATED 41 
 ath-e.2   CLE41   CLAVATA3/ESR-RELATED 41 
 ath-m.4.bio   CLE41   CLAVATA3/ESR-RELATED 41 
 ath-m.4.hor   CLE41   CLAVATA3/ESR-RELATED 41 
 ath-m.4.lig   CLE41   CLAVATA3/ESR-RELATED 41 
 ath-m.4.str   CLE41   CLAVATA3/ESR-RELATED 41 
 ath-m.4.tis   CLE41   CLAVATA3/ESR-RELATED 41 
 ath-u.5   CLE44   CLAVATA3/ESR-RELATED 44 
 bra-r.6   103860255   CLAVATA3/ESR (CLE)-related protein 41 
 bra-r.6   103828602   CLAVATA3/ESR (CLE)-related protein 41 
 bna-r.1   106361795   CLAVATA3/ESR (CLE)-related protein 41-like 
 bna-r.1   106416558   CLAVATA3/ESR (CLE)-related protein 41-like 
 bna-r.1   106430310   CLAVATA3/ESR (CLE)-related protein 41-like 
 ghi-r.1   121219939   CLAVATA3/ESR (CLE)-related protein 41 
 gma-u.5   100789083   CLAVATA3/ESR (CLE)-related protein TDIF 
 gma-u.5   100802727   CLAVATA3/ESR (CLE)-related protein TDIF-like protein 
 vvi-u.5   100853965   CLAVATA3/ESR (CLE)-related protein TDIF 

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Top 50 coexpressed genes to CLE41 (ath-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to CLE41 (ath-u.5 coexpression data)

CoexMap"822075"


athCLE41 | Entrez gene ID : 822075      
Species ath bra bna ghi gma vvi cre ppo hvu mtr nta tae bdi osa zma sly cit sot sbi
Paralog 10 2 3 1 2 1 0 0 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0090506 [list] [network] axillary shoot meristem initiation  (9 genes)  IDA  
GO:0010067 [list] [network] procambium histogenesis  (10 genes)  IDA  
GO:0010223 [list] [network] secondary shoot formation  (25 genes)  IMP  
GO:0010088 [list] [network] phloem development  (31 genes)  IDA  
GO:0045168 [list] [network] cell-cell signaling involved in cell fate commitment  (38 genes)  ISS  
GO:0010078 [list] [network] maintenance of root meristem identity  (40 genes)  IDA  
GO:0010089 [list] [network] xylem development  (46 genes)  IDA  
GO:0045595 [list] [network] regulation of cell differentiation  (66 genes)  IDA  
GO:0010087 [list] [network] phloem or xylem histogenesis  (125 genes)  IDA IMP  
GO:0051301 [list] [network] cell division  (192 genes)  IMP  
GO CC
GO:0048046 [list] [network] apoplast  (340 genes)  IDA ISM  
GO:0005739 [list] [network] mitochondrion  (4244 genes)  ISM  
GO MF
GO:0033612 [list] [network] receptor serine/threonine kinase binding  (72 genes)  IPI  
Protein NP_566754.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 6,  cyto 1,  mito 1,  plas 1,  extr 1,  cyto_nucl 1,  cyto_pero 1,  mito_plas 1,  cyto_E.R. 1  (predict for NP_566754.1)
Subcellular
localization
TargetP
chlo 4  (predict for NP_566754.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-u.5
for
CLE41
ath-r.7
for
CLE41
ath-m.9
for
CLE41
ath-e.2
for
CLE41
ath-m.4.bio
for
CLE41
ath-m.4.hor
for
CLE41
ath-m.4.lig
for
CLE41
ath-m.4.str
for
CLE41
ath-m.4.tis
for
CLE41
ath-u.5
for
CLE44
bra-r.6
for
103860255
bra-r.6
for
103828602
bna-r.1
for
106361795
bna-r.1
for
106416558
bna-r.1
for
106430310
ghi-r.1
for
121219939
gma-u.5
for
100789083
gma-u.5
for
100802727
vvi-u.5
for
100853965


Ortholog ID: 13724
Species ath ath bra bra bna bna bna ghi gma gma vvi
Symbol CLE41 CLE44 LOC103860255 LOC103828602 LOC106430310 LOC106443945 LOC125594391 LOC121219939 LOC100789083 LOC100802727 LOC100853965
Function* CLAVATA3/ESR-RELATED 41 CLAVATA3/ESR-RELATED 44 CLAVATA3/ESR (CLE)-related protein 41 CLAVATA3/ESR (CLE)-related protein 41 CLAVATA3/ESR (CLE)-related protein 41-like CLAVATA3/ESR (CLE)-related protein 41-like CLAVATA3/ESR (CLE)-related protein 41-like CLAVATA3/ESR (CLE)-related protein 41 CLAVATA3/ESR (CLE)-related protein TDIF CLAVATA3/ESR (CLE)-related protein TDIF-like protein CLAVATA3/ESR (CLE)-related protein TDIF
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04075 Plant hormone signal transduction 3
ath04016 MAPK signaling pathway - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath01240 Biosynthesis of cofactors 2
ath04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00564 Glycerophospholipid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00908 Zeatin biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04142 Lysosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04075 Plant hormone signal transduction 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 822075 826934 103860255 103828602 106430310 106443945 125594391 121219939 100789083 100802727 100853965
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