ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
ath-u.5	TIP2	tonoplast intrinsic protein 2
ath-r.7	TIP2	tonoplast intrinsic protein 2
ath-m.9	TIP2	tonoplast intrinsic protein 2
ath-e.2	TIP2	tonoplast intrinsic protein 2
ath-m.4.bio	TIP2	tonoplast intrinsic protein 2
ath-m.4.hor	TIP2	tonoplast intrinsic protein 2
ath-m.4.lig	TIP2	tonoplast intrinsic protein 2
ath-m.4.str	TIP2	tonoplast intrinsic protein 2
ath-m.4.tis	TIP2	tonoplast intrinsic protein 2
ath-u.5	TIP3;1	Aquaporin-like superfamily protein
ath-u.5	GAMMA-TIP	gamma tonoplast intrinsic protein
ath-u.5	DELTA-TIP	delta tonoplast integral protein
bra-r.6	103875293	aquaporin TIP1-2
bra-r.6	103865561	aquaporin TIP1-1
bra-r.6	103827648	aquaporin TIP2-3
bna-r.1	106452220	aquaporin TIP2-1
bna-r.1	125585648	aquaporin TIP1-1
bna-r.1	125587804	aquaporin TIP2-3-like
ghi-r.1	107929356	probable aquaporin TIP-type
ghi-r.1	107931794	probable aquaporin TIP1-2
ghi-r.1	107932296	probable aquaporin TIP-type
cit-r.1	102611770	aquaporin TIP4-1
cit-r.1	102621052	aquaporin TIP1-3
cit-r.1	102624065	aquaporin TIP2-1
gma-u.5	100788583	aquaporin TIP1-1
gma-u.5	TIP4-1	aquaporin TIP4-1
gma-u.5	100814469	aquaporin TIP3-3
vvi-u.5	100250080	aquaporin TIP1-2
vvi-u.5	100263698	aquaporin TIP1-1
ppo-u.5	7463322	aquaporin TIP1-1
ppo-u.5	7478410	aquaporin TIP2-1
sly-u.5	TIP2-2	tonoplast intrinsic protein 2.2
sly-u.5	101251154	probable aquaporin TIP3-2-like
sly-u.5	778315	aquaporin-like
sot-r.1	102587828	aquaporin TIP1-3-like
sot-r.1	102591890	probable aquaporin TIP1-1
sot-r.1	102603645	aquaporin TIP2-1
nta-r.1	107802859	putative aquaporin TIP-type RB7-18C
nta-r.1	107801866	aquaporin TIP2-1-like
nta-r.1	107794022	aquaporin TIP1-1-like
osa-u.5	4324277	probable aquaporin TIP4-2
osa-u.5	4324276	probable aquaporin TIP4-3
osa-u.5	4324303	probable aquaporin TIP1-2
zma-u.5	103635714	aquaporin TIP4-2-like
zma-u.5	103646110	aquaporin TIP2-3-like
zma-u.5	103646186	probable aquaporin TIP3-2
tae-r.2	123065225	aquaporin TIP4-4
tae-r.2	123065226	probable aquaporin TIP4-2
tae-r.2	123072891	probable aquaporin TIP1-2
hvu-r.1	123407685	probable aquaporin TIP2-2
hvu-r.1	123402410	probable aquaporin TIP2-1
hvu-r.1	123449894	probable aquaporin TIP4-1
sbi-r.1	8076232	aquaporin TIP2-1
sbi-r.1	8080564	aquaporin TIP1-1
bdi-r.1	100838472	probable aquaporin TIP4-1
bdi-r.1	100843246	probable aquaporin TIP1-2
cre-r.1	CHLRE_12g549300v5	uncharacterized protein

Top 50 coexpressed genes to TIP2 (ath-u.5 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to TIP2 (ath-u.5 coexpression data)

CoexMap"822259"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO:0080170 [list] [network] hydrogen peroxide transmembrane transport	(6 genes)	IDA
GO:1902074 [list] [network] response to salt	(50 genes)	IDA

GO CC

GO:0043674 [list] [network] columella	(2 genes)	IDA
GO:0000325 [list] [network] plant-type vacuole	(788 genes)	HDA
GO:0005783 [list] [network] endoplasmic reticulum	(897 genes)	IDA
GO:0005773 [list] [network] vacuole	(984 genes)	HDA
GO:0005794 [list] [network] Golgi apparatus	(1198 genes)	HDA
GO:0005829 [list] [network] cytosol	(2593 genes)	HDA
GO:0005886 [list] [network] plasma membrane	(2598 genes)	HDA
GO:0009507 [list] [network] chloroplast	(5014 genes)	HDA ISM

GO MF

GO:0015250 [list] [network] water channel activity	(36 genes)	ISS
GO:0003729 [list] [network] mRNA binding	(1514 genes)	IDA

Protein

NP_189283.1 [sequence] [blastp]

Subcellular
localization
wolf

vacu 4, plas 4, cyto 1

(predict for NP_189283.1)

Subcellular
localization
TargetP

other 6

(predict for NP_189283.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target				Condition-specific^*					Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	ath-u.5 for TIP2	ath-r.7 for TIP2	ath-m.9 for TIP2	ath-e.2 for TIP2	ath-m.4.bio for TIP2	ath-m.4.hor for TIP2	ath-m.4.lig for TIP2	ath-m.4.str for TIP2	ath-m.4.tis for TIP2	ath-u.5 for TIP3;1	ath-u.5 for GAMMA-TIP	ath-u.5 for DELTA-TIP	bra-r.6 for 103875293	bra-r.6 for 103865561	bra-r.6 for 103827648	bna-r.1 for 106452220	bna-r.1 for 125585648	bna-r.1 for 125587804	ghi-r.1 for 107929356	ghi-r.1 for 107931794	ghi-r.1 for 107932296	cit-r.1 for 102611770	cit-r.1 for 102621052	cit-r.1 for 102624065	gma-u.5 for 100788583	gma-u.5 for TIP4-1	gma-u.5 for 100814469	vvi-u.5 for 100250080	vvi-u.5 for 100263698	ppo-u.5 for 7463322	ppo-u.5 for 7478410	sly-u.5 for TIP2-2	sly-u.5 for 101251154	sly-u.5 for 778315	sot-r.1 for 102587828	sot-r.1 for 102591890	sot-r.1 for 102603645	nta-r.1 for 107802859	nta-r.1 for 107801866	nta-r.1 for 107794022	osa-u.5 for 4324277	osa-u.5 for 4324276	osa-u.5 for 4324303	zma-u.5 for 103635714	zma-u.5 for 103646110	zma-u.5 for 103646186	tae-r.2 for 123065225	tae-r.2 for 123065226	tae-r.2 for 123072891	hvu-r.1 for 123407685	hvu-r.1 for 123402410	hvu-r.1 for 123449894	sbi-r.1 for 8076232	sbi-r.1 for 8080564	bdi-r.1 for 100838472	bdi-r.1 for 100843246	cre-r.1 for CHLRE_12g549300v5

Ortholog

Ortholog ID: 83

Species

ath

bra

bna

ghi

cit

gma

vvi

mtr

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

cre

Symbol

TIP2;2

TIP1;1

TIP1;2

TIP2-2

Function^*

gamma tonoplast intrinsic protein

tonoplast intrinsic protein 2;2

probable aquaporin TIP3-2

probable aquaporin TIP2-2

aquaporin TIP3-1

aquaporin TIP1-3

probable aquaporin TIP-type

aquaporin TIP1-1

probable aquaporin TIP1-2

aquaporin TIP4-1

aquaporin TIP2-1

probable aquaporin TIP2-2

aquaporin TIP2-5

aquaporin TIP1-1

aquaporin-like

aquaporin TIP2-1

aquaporin TIP4-1

probable aquaporin TIP-type RB7-5A

tonoplast intrinsic protein 2.2

aquaporin-like

probable aquaporin TIP5-1

probable aquaporin TIP3-2

aquaporin TIP1-1

aquaporin TIP2-1-like

putative aquaporin TIP-type RB7-18C

putative aquaporin TIP1-1

probable aquaporin TIP3-2

probable aquaporin TIP3-1

probable aquaporin TIP1-1

aquaporin TIP4-2-like

aquaporin TIP2-3-like

aquaporin TIP2-3

probable aquaporin TIP2-2

probable aquaporin TIP4-1

probable aquaporin TIP3-1

aquaporin TIP4-4

aquaporin TIP4-2

probable aquaporin TIP4-1

probable aquaporin TIP4-2

probable aquaporin TIP4-3

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra00940	Phenylpropanoid biosynthesis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna00190	Oxidative phosphorylation	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00940	Phenylpropanoid biosynthesis	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi04120	Ubiquitin mediated proteolysis	2
ghi03010	Ribosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit00941	Flavonoid biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit00999	Biosynthesis of various plant secondary metabolites	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr00940	Phenylpropanoid biosynthesis	2
mtr00960	Tropane, piperidine and pyridine alkaloid biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03040	Spliceosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot04141	Protein processing in endoplasmic reticulum	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot00592	alpha-Linolenic acid metabolism	2
sot01250	Biosynthesis of nucleotide sugars	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot02010	ABC transporters	4
sot00940	Phenylpropanoid biosynthesis	4
sot00910	Nitrogen metabolism	2
sot00620	Pyruvate metabolism	2
sot00710	Carbon fixation by Calvin cycle	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00740	Riboflavin metabolism	2
nta04142	Lysosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma04712	Circadian rhythm - plant	7

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma00940	Phenylpropanoid biosynthesis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00052	Galactose metabolism	3
tae00561	Glycerolipid metabolism	3
tae00600	Sphingolipid metabolism	3
tae00603	Glycosphingolipid biosynthesis - globo and isoglobo series	3
tae00940	Phenylpropanoid biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi04712	Circadian rhythm - plant	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi00073	Cutin, suberine and wax biosynthesis	2
bdi04146	Peroxisome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi01200	Carbon metabolism	5
bdi00630	Glyoxylate and dicarboxylate metabolism	4
bdi04146	Peroxisome	3
bdi00250	Alanine, aspartate and glutamate metabolism	2
bdi00260	Glycine, serine and threonine metabolism	2

Expression

Expression pattern

Entrez Gene ID^*

818255

827446

103872561

103868228

106399493

106426631

107929356

121216027

121212692

102611770

102624065

102627157

100805635

100263698

100233003

100233004

11435009

11432805

11428968

101055566

778315

101261595

102602512

102589703

102596615

107801866

107802889

107830277

4336464

4348981

4331608

103635714

103646110

123041819

100037645

123449894

123409954

8078102

8066640

100838472

100838461

100844557

5719640

The preparation time of this page was 0.2 [sec].


Species	ath	bra	bna	ghi	cit	gma	vvi	ppo	sly	sot	nta	osa	zma	tae	hvu	sbi	bdi	cre	mtr
Paralog	12	3	3	3	3	3	2	2	3	3	3	3	3	3	3	2	2	1	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to TIP2 (ath-u.5 coexpression data)

Top 50 enrichment test to TIP2 (ath-u.5 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**