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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-u.5   CCB1   cofactor assembly of complex C 
 ath-r.7   CCB1   cofactor assembly of complex C 
 ath-m.9   CCB1   cofactor assembly of complex C 
 ath-e.2   CCB1   cofactor assembly of complex C 
 ath-m.4.bio   CCB1   cofactor assembly of complex C 
 ath-m.4.hor   CCB1   cofactor assembly of complex C 
 ath-m.4.lig   CCB1   cofactor assembly of complex C 
 ath-m.4.str   CCB1   cofactor assembly of complex C 
 ath-m.4.tis   CCB1   cofactor assembly of complex C 
 bra-r.6   103875278   protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB1, chloroplastic 
 bra-r.6   103854303   protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB1, chloroplastic 
 bna-r.1   106409668   protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB1, chloroplastic-like 
 bna-r.1   106402307   protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB1, chloroplastic-like 
 bna-r.1   125606672   protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB1, chloroplastic 
 ghi-r.1   107924148   protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB1, chloroplastic 
 ghi-r.1   107911747   protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB1, chloroplastic 
 cit-r.1   102625115   protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB1, chloroplastic 
 gma-u.5   100807450   uncharacterized LOC100807450 
 gma-u.5   100803392   protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB1, chloroplastic 
 vvi-u.5   100256625   protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB1, chloroplastic 
 ppo-u.5   7480407   protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB1, chloroplastic 
 mtr-u.5   11429119   protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB1, chloroplastic 
 sly-u.5   101248341   protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB1, chloroplastic 
 sot-r.1   102592467   protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB1, chloroplastic 
 nta-r.1   107825608   protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB1, chloroplastic-like 
 nta-r.1   107779431   protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB1, chloroplastic 
 osa-u.5   4350622   protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB1, chloroplastic 
 zma-u.5   100278550   uncharacterized LOC100278550 
 tae-r.2   123072494   protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB1, chloroplastic 
 tae-r.2   123080708   protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB1, chloroplastic 
 hvu-r.1   123445496   protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB1, chloroplastic 
 sbi-r.1   8083165   protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB1, chloroplastic 
 bdi-r.1   100826992   protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB1, chloroplastic 
 cre-r.1   CHLRE_16g662150v5   uncharacterized protein 

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Top 50 coexpressed genes to CCB1 (ath-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to CCB1 (ath-u.5 coexpression data)

CoexMap"822283"


athCCB1 | Entrez gene ID : 822283      
Species ath bra bna ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 9 2 3 2 1 2 1 1 1 1 1 2 1 1 2 1 1 1 1
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0010190 [list] [network] cytochrome b6f complex assembly  (8 genes)  IMP  
GO CC
GO:0005829 [list] [network] cytosol  (2593 genes)  HDA  
GO:0009507 [list] [network] chloroplast  (5014 genes)  HDA IDA ISM  
GO MF
Protein NP_566797.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 4,  cyto 2,  cyto_nucl 2,  chlo_mito 2  (predict for NP_566797.1)
Subcellular
localization
TargetP
chlo 9  (predict for NP_566797.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-u.5
for
CCB1
ath-r.7
for
CCB1
ath-m.9
for
CCB1
ath-e.2
for
CCB1
ath-m.4.bio
for
CCB1
ath-m.4.hor
for
CCB1
ath-m.4.lig
for
CCB1
ath-m.4.str
for
CCB1
ath-m.4.tis
for
CCB1
bra-r.6
for
103875278
bra-r.6
for
103854303
bna-r.1
for
106409668
bna-r.1
for
106402307
bna-r.1
for
125606672
ghi-r.1
for
107924148
ghi-r.1
for
107911747
cit-r.1
for
102625115
gma-u.5
for
100807450
gma-u.5
for
100803392
vvi-u.5
for
100256625
ppo-u.5
for
7480407
mtr-u.5
for
11429119
sly-u.5
for
101248341
sot-r.1
for
102592467
nta-r.1
for
107825608
nta-r.1
for
107779431
osa-u.5
for
4350622
zma-u.5
for
100278550
tae-r.2
for
123072494
tae-r.2
for
123080708
hvu-r.1
for
123445496
sbi-r.1
for
8083165
bdi-r.1
for
100826992
cre-r.1
for
CHLRE_16g662150v5


Ortholog ID: 7232
Species ath bra bra bna bna bna ghi ghi cit gma gma vvi ppo mtr sly sot nta nta osa zma tae tae hvu sbi bdi cre
Symbol CCB1 LOC103875278 LOC103854303 LOC106402307 LOC125606672 LOC106349319 LOC107924148 LOC107911747 LOC102625115 LOC100807450 LOC100803392 LOC100256625 LOC7480407 LOC11429119 LOC101248341 LOC102592467 LOC107825608 LOC107779431 LOC4350622 LOC100278550 LOC123080708 LOC123113945 LOC123445496 LOC8083165 LOC100826992 CHLRE_16g662150v5
Function* cofactor assembly of complex C protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB1, chloroplastic protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB1, chloroplastic protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB1, chloroplastic-like protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB1, chloroplastic protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB1, chloroplastic-like protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB1, chloroplastic protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB1, chloroplastic protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB1, chloroplastic uncharacterized LOC100807450 protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB1, chloroplastic protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB1, chloroplastic protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB1, chloroplastic protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB1, chloroplastic protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB1, chloroplastic protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB1, chloroplastic protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB1, chloroplastic-like protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB1, chloroplastic protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB1, chloroplastic uncharacterized LOC100278550 protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB1, chloroplastic protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB1, chloroplastic protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB1, chloroplastic protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB1, chloroplastic protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB1, chloroplastic uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03010 Ribosome 12
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03010 Ribosome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03010 Ribosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00195 Photosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03010 Ribosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03010 Ribosome 13
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03010 Ribosome 13
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03010 Ribosome 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04626 Plant-pathogen interaction 4
nta00620 Pyruvate metabolism 3
nta00710 Carbon fixation by Calvin cycle 3
nta01200 Carbon metabolism 3
nta00020 Citrate cycle (TCA cycle) 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04626 Plant-pathogen interaction 4
nta00620 Pyruvate metabolism 3
nta00710 Carbon fixation by Calvin cycle 3
nta01200 Carbon metabolism 3
nta00020 Citrate cycle (TCA cycle) 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00630 Glyoxylate and dicarboxylate metabolism 4
osa01200 Carbon metabolism 4
osa00260 Glycine, serine and threonine metabolism 2
osa00710 Carbon fixation by Calvin cycle 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00970 Aminoacyl-tRNA biosynthesis 4
zma01240 Biosynthesis of cofactors 4
zma03010 Ribosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00630 Glyoxylate and dicarboxylate metabolism 4
tae00710 Carbon fixation by Calvin cycle 4
tae01200 Carbon metabolism 4
tae00020 Citrate cycle (TCA cycle) 3
tae00270 Cysteine and methionine metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00590 Arachidonic acid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu01240 Biosynthesis of cofactors 4
hvu00860 Porphyrin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03060 Protein export 2
sbi00330 Arginine and proline metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre00970 Aminoacyl-tRNA biosynthesis 7
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 822283 103875278 103854303 106402307 125606672 106349319 107924148 107911747 102625115 100807450 100803392 100256625 7480407 11429119 101248341 102592467 107825608 107779431 4350622 100278550 123080708 123113945 123445496 8083165 100826992 5723435
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