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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-u.5   RABE1c   RAB GTPase homolog 8A 
 ath-r.7   RABE1c   RAB GTPase homolog 8A 
 ath-m.9   RABE1c   RAB GTPase homolog 8A 
 ath-e.2   RABE1c   RAB GTPase homolog 8A 
 ath-m.4.bio   RABE1c   RAB GTPase homolog 8A 
 ath-m.4.hor   RABE1c   RAB GTPase homolog 8A 
 ath-m.4.lig   RABE1c   RAB GTPase homolog 8A 
 ath-m.4.str   RABE1c   RAB GTPase homolog 8A 
 ath-m.4.tis   RABE1c   RAB GTPase homolog 8A 
 ath-u.5   RABE1e   RAB GTPase homolog E1E 
 ath-u.5   RAB8   RAB GTPase homolog 8 
 ath-u.5   RAB8C   RAB GTPase homolog 8C 
 gma-u.5   100779203   ras-related protein RABE1c-like 
 gma-u.5   100816795   ras-related protein RABE1c-like 
 gma-u.5   100800345   ras-related protein RABE1c 
 vvi-u.5   100263639   ras-related protein RABE1c 
 vvi-u.5   100243217   ras-related protein RABE1c 
 vvi-u.5   100257177   ras-related protein RABE1c 
 ppo-u.5   7469805   ras-related protein RABE1c 
 ppo-u.5   7458596   ras-related protein RABE1c 
 ppo-u.5   7465129   ras-related protein RABE1c 
 mtr-u.5   25485703   ras-related protein RABE1c 
 mtr-u.5   11412245   ras-related protein RABE1c 
 sly-u.5   101250995   ras-related protein RABE1c 
 sly-u.5   101267153   ras-related protein RABE1a 
 sly-u.5   101264577   ras-related protein RABE1c 
 osa-u.5   4334590   ras-related protein RABE1c 
 osa-u.5   4342644   ras-related protein RABE1d 
 osa-u.5   4342802   ras-related protein RABE1c 
 zma-u.5   100502497   uncharacterized LOC100502497 
 zma-u.5   103644714   ras-related protein RABE1c 
 zma-u.5   100192989   uncharacterized LOC100192989 

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Top 50 coexpressed genes to RABE1c (ath-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to RABE1c (ath-u.5 coexpression data)

CoexMap"823749"


athRABE1c | Entrez gene ID : 823749      
Species ath gma vvi ppo mtr sly osa zma sbi nta bra cre hvu cit bdi sot tae bna ghi
Paralog 12 3 3 3 2 3 3 3 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG ath04144 [list] [network] Endocytosis (156 genes)
GO BP
GO:0009873 [list] [network] ethylene-activated signaling pathway  (61 genes)  IEP  
GO CC
GO:0000325 [list] [network] plant-type vacuole  (788 genes)  HDA  
GO:0005829 [list] [network] cytosol  (2593 genes)  HDA  
GO:0005886 [list] [network] plasma membrane  (2598 genes)  HDA  
GO MF
GO:0005525 [list] [network] GTP binding  (83 genes)  ISS  
GO:0005515 [list] [network] protein binding  (5363 genes)  IPI  
Protein NP_001078248.1 [sequence] [blastp]
NP_001118780.1 [sequence] [blastp]
NP_190192.1 [sequence] [blastp]
Subcellular
localization
wolf
cyto 5,  chlo 2,  mito 1,  nucl 1,  extr 1,  cyto_mito 1,  mito_plas 1  (predict for NP_001078248.1)
cyto 5,  chlo 2,  mito 1,  nucl 1,  extr 1,  cyto_mito 1,  mito_plas 1  (predict for NP_001118780.1)
cyto 5,  chlo 2,  mito 1,  nucl 1,  extr 1,  cyto_mito 1,  mito_plas 1  (predict for NP_190192.1)
Subcellular
localization
TargetP
other 5,  scret 4,  mito 3  (predict for NP_001078248.1)
other 5,  scret 4,  mito 3  (predict for NP_001118780.1)
other 5,  scret 4,  mito 3  (predict for NP_190192.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-u.5
for
RABE1c

.
ath-r.7
for
RABE1c

.
ath-m.9
for
RABE1c

.
ath-e.2
for
RABE1c

.
ath-m.4.bio
for
RABE1c

.
ath-m.4.hor
for
RABE1c

.
ath-m.4.lig
for
RABE1c

.
ath-m.4.str
for
RABE1c

.
ath-m.4.tis
for
RABE1c

.
ath-u.5
for
RABE1e

.
ath-u.5
for
RAB8

.
ath-u.5
for
RAB8C

.
gma-u.5
for
100779203

.
gma-u.5
for
100816795

.
gma-u.5
for
100800345

.
vvi-u.5
for
100263639

.
vvi-u.5
for
100243217

.
vvi-u.5
for
100257177

.
ppo-u.5
for
7469805

.
ppo-u.5
for
7458596

.
ppo-u.5
for
7465129

.
mtr-u.5
for
25485703

.
mtr-u.5
for
11412245

.
sly-u.5
for
101250995

.
sly-u.5
for
101267153

.
sly-u.5
for
101264577

.
osa-u.5
for
4334590

.
osa-u.5
for
4342644

.
osa-u.5
for
4342802

.
zma-u.5
for
100502497

.
zma-u.5
for
103644714

.
zma-u.5
for
100192989

.


Ortholog ID: 519
Species ath ath gma gma sly sly osa osa zma zma bra bra vvi vvi ppo ppo mtr tae tae hvu hvu ghi ghi bna bna cre sbi sbi sot sot cit cit bdi bdi nta nta
Symbol AT5G59840 RAB8C LOC100786439 LOC100800345 ypt2 ER43 LOC4342802 LOC4339021 LOC103649028 LOC103643924 LOC103841286 LOC103851543 LOC100243217 LOC100252992 LOC7458596 LOC7488135 LOC11412245 LOC123059201 LOC123079682 LOC123453022 LOC123445361 LOC121212690 LOC107948822 LOC106428672 LOC106347527 CHLRE_15g641800v5 LOC8072553 LOC110432910 LOC102587980 LOC102591326 LOC102622465 LOC102631031 LOC100837482 LOC100845773 LOC107828736 LOC107767066
Function* Ras-related small GTP-binding family protein RAB GTPase homolog 8C ras-related protein RABE1c ras-related protein RABE1c GTP-binding protein ethylene-responsive small GTP-binding protein ras-related protein RABE1c ras-related protein RABE1c ras-related protein RABE1c ras-related protein RABE1c ras-related protein RABE1a ras-related protein RABE1c ras-related protein RABE1c ras-related protein RABE1c ras-related protein RABE1c ras-related protein RABE1c ras-related protein RABE1c ras-related protein RABE1c ras-related protein RABE1c ras-related protein RABE1c-like ras-related protein RABE1c-like ras-related protein RABE1c ras-related protein RABE1c ras-related protein RABE1d ras-related protein RABE1c-like uncharacterized protein ras-related protein RABE1c ras-related protein RABE1c-like ras-related protein RABE1a ras-related protein RABE1c-like ras-related protein RABE1c ras-related protein RABE1c-like ras-related protein RABE1c ras-related protein RABE1c ras-related protein RABE1a-like ras-related protein RABE1c-like
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04144 Endocytosis 4
ath04141 Protein processing in endoplasmic reticulum 2
ath03050 Proteasome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04145 Phagosome 2
ath04148 Efferocytosis 2
ath04517 IgSF CAM signaling 2
ath04518 Integrin signaling 2
ath04620 Toll-like receptor signaling pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03050 Proteasome 4
gma04130 SNARE interactions in vesicular transport 3
gma04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04145 Phagosome 4
gma04144 Endocytosis 3
gma04130 SNARE interactions in vesicular transport 3
gma03060 Protein export 3
gma04141 Protein processing in endoplasmic reticulum 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00190 Oxidative phosphorylation 4
sly04130 SNARE interactions in vesicular transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04144 Endocytosis 4
sly04075 Plant hormone signal transduction 4
sly04016 MAPK signaling pathway - plant 3
sly04070 Phosphatidylinositol signaling system 3
sly04626 Plant-pathogen interaction 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04144 Endocytosis 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04144 Endocytosis 6
osa04142 Lysosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04144 Endocytosis 11
zma04517 IgSF CAM signaling 7
zma05100 Bacterial invasion of epithelial cells 7
zma00240 Pyrimidine metabolism 2
zma01232 Nucleotide metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04144 Endocytosis 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04144 Endocytosis 2
bra03008 Ribosome biogenesis in eukaryotes 2
bra04712 Circadian rhythm - plant 2
bra04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04144 Endocytosis 5
vvi04142 Lysosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04145 Phagosome 3
vvi00190 Oxidative phosphorylation 3
vvi04142 Lysosome 2
vvi04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04120 Ubiquitin mediated proteolysis 7
ppo04141 Protein processing in endoplasmic reticulum 6
ppo03083 Polycomb repressive complex 4
ppo04144 Endocytosis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04144 Endocytosis 5
ppo04517 IgSF CAM signaling 2
ppo05100 Bacterial invasion of epithelial cells 2
ppo04130 SNARE interactions in vesicular transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04144 Endocytosis 4
mtr04130 SNARE interactions in vesicular transport 3
mtr04141 Protein processing in endoplasmic reticulum 2
mtr04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04144 Endocytosis 4
tae04120 Ubiquitin mediated proteolysis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00563 Glycosylphosphatidylinositol (GPI)-anchor biosynthesis 3
tae04144 Endocytosis 2
tae00520 Amino sugar and nucleotide sugar metabolism 2
tae01250 Biosynthesis of nucleotide sugars 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu04144 Endocytosis 3
hvu04141 Protein processing in endoplasmic reticulum 2
hvu03050 Proteasome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03040 Spliceosome 4
ghi03018 RNA degradation 3
ghi04142 Lysosome 2
ghi03022 Basal transcription factors 2
ghi04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00190 Oxidative phosphorylation 4
ghi04142 Lysosome 4
ghi04145 Phagosome 4
ghi04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04144 Endocytosis 10
bna04145 Phagosome 6
bna04148 Efferocytosis 6
bna03083 Polycomb repressive complex 3
bna04120 Ubiquitin mediated proteolysis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04144 Endocytosis 12
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre04144 Endocytosis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03083 Polycomb repressive complex 2
sbi04120 Ubiquitin mediated proteolysis 2
sbi04141 Protein processing in endoplasmic reticulum 2
sbi04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi04144 Endocytosis 2
sbi00564 Glycerophospholipid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03040 Spliceosome 3
sot03013 Nucleocytoplasmic transport 2
sot04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00190 Oxidative phosphorylation 4
sot04144 Endocytosis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit04145 Phagosome 5
cit00190 Oxidative phosphorylation 4
cit04141 Protein processing in endoplasmic reticulum 3
cit04144 Endocytosis 2
cit04142 Lysosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00480 Glutathione metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi04144 Endocytosis 6
bdi04145 Phagosome 2
bdi04148 Efferocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi04144 Endocytosis 4
bdi04016 MAPK signaling pathway - plant 2
bdi04070 Phosphatidylinositol signaling system 2
bdi04075 Plant hormone signal transduction 2
bdi04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04120 Ubiquitin mediated proteolysis 6
nta04144 Endocytosis 4
nta03083 Polycomb repressive complex 3
nta04141 Protein processing in endoplasmic reticulum 3
nta03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04120 Ubiquitin mediated proteolysis 10
nta03083 Polycomb repressive complex 6
nta04141 Protein processing in endoplasmic reticulum 6
nta04144 Endocytosis 5
nta03013 Nucleocytoplasmic transport 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 836105 831817 100786439 100800345 544288 543575 4342802 4339021 103649028 103643924 103841286 103851543 100243217 100252992 7458596 7488135 11412245 123059201 123079682 123453022 123445361 121212690 107948822 106428672 106347527 5728621 8072553 110432910 102587980 102591326 102622465 102631031 100837482 100845773 107828736 107767066
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