ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
ath-u.5	AT3G48060	BAH and TFIIS domain-containing protein
ath-r.7	AT3G48060	BAH and TFIIS domain-containing protein
ath-e.2	AT3G48060	BAH and TFIIS domain-containing protein
ath-u.5	SUO	protein SUO
bra-r.6	103837431	uncharacterized LOC103837431
bra-r.6	103837430	uncharacterized LOC103837430
bna-r.1	125598859	uncharacterized LOC125598859
bna-r.1	111212185	uncharacterized LOC111212185
bna-r.1	106362715	uncharacterized LOC106362715
ghi-r.1	107944116	uncharacterized LOC107944116
ghi-r.1	107939786	mucin-19
ghi-r.1	107939281	mucin-19
cit-r.1	102607943	uncharacterized LOC102607943
cit-r.1	102607643	uncharacterized LOC102607643
gma-u.5	112998769	uncharacterized LOC112998769
gma-u.5	100806155	uncharacterized LOC100806155
gma-u.5	100788512	uncharacterized LOC100788512
vvi-u.5	100248456	uncharacterized LOC100248456
vvi-u.5	100252575	uncharacterized LOC100252575
ppo-u.5	7458023	uncharacterized LOC7458023
ppo-u.5	7474885	uncharacterized LOC7474885
ppo-u.5	7474882	uncharacterized LOC7474882
mtr-u.5	25495221	uncharacterized LOC25495221
sly-u.5	101255308	BAH domain-containing protein, putative
sly-u.5	101252674	uncharacterized LOC101252674
sot-r.1	102588004	uncharacterized LOC102588004
nta-r.1	107821904	uncharacterized LOC107821904
nta-r.1	107810712	uncharacterized LOC107810712
nta-r.1	107776440	uncharacterized LOC107776440
osa-u.5	4330691	uncharacterized LOC4330691
osa-u.5	4330692	uncharacterized LOC4330692
zma-u.5	103637703	uncharacterized LOC103637703
zma-u.5	103652964	uncharacterized LOC103652964
zma-u.5	103638899	uncharacterized LOC103638899
tae-r.2	123145514	uncharacterized LOC123145514
tae-r.2	123128395	uncharacterized LOC123128395
tae-r.2	123138257	uncharacterized LOC123138257
hvu-r.1	123401861	microtubule-associated protein futsch-like
hvu-r.1	123402758	uncharacterized LOC123402758
sbi-r.1	110433336	uncharacterized LOC110433336
sbi-r.1	8055610	uncharacterized LOC8055610
bdi-r.1	100824814	uncharacterized LOC100824814
bdi-r.1	100838793	uncharacterized LOC100838793

Top 50 coexpressed genes to AT3G48060 (ath-u.5 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to AT3G48060 (ath-u.5 coexpression data)

CoexMap"823961"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO CC

GO:0005576 [list] [network] extracellular region	(3158 genes)	ISM
GO:0005634 [list] [network] nucleus	(10367 genes)	IEA

GO MF

GO:0003682 [list] [network] chromatin binding

(103 genes)

IEA

Protein

NP_001327753.1 [sequence] [blastp]
NP_001327754.1 [sequence] [blastp]
NP_190389.1 [sequence] [blastp]

Subcellular
localization
wolf

chlo 4, mito 3, nucl 2, cyto_mito 2	(predict for NP_001327753.1)
chlo_mito 4, chlo 4, mito 4, cyto_mito 2, nucl 1	(predict for NP_001327754.1)
chlo_mito 4, chlo 4, mito 4, cyto_mito 2, nucl 1	(predict for NP_190389.1)

Subcellular
localization
TargetP

mito 6, chlo 4	(predict for NP_001327753.1)
mito 6, chlo 4	(predict for NP_001327754.1)
mito 6, chlo 4	(predict for NP_190389.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Condition-specific^*					Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	ath-u.5 for AT3G48060	ath-r.7 for AT3G48060	ath-e.2 for AT3G48060	ath-u.5 for SUO	bra-r.6 for 103837431	bra-r.6 for 103837430	bna-r.1 for 125598859	bna-r.1 for 111212185	bna-r.1 for 106362715	ghi-r.1 for 107944116	ghi-r.1 for 107939786	ghi-r.1 for 107939281	cit-r.1 for 102607943	cit-r.1 for 102607643	gma-u.5 for 112998769	gma-u.5 for 100806155	gma-u.5 for 100788512	vvi-u.5 for 100248456	vvi-u.5 for 100252575	ppo-u.5 for 7458023	ppo-u.5 for 7474885	ppo-u.5 for 7474882	mtr-u.5 for 25495221	sly-u.5 for 101255308	sly-u.5 for 101252674	sot-r.1 for 102588004	nta-r.1 for 107821904	nta-r.1 for 107810712	nta-r.1 for 107776440	osa-u.5 for 4330691	osa-u.5 for 4330692	zma-u.5 for 103637703	zma-u.5 for 103652964	zma-u.5 for 103638899	tae-r.2 for 123145514	tae-r.2 for 123128395	tae-r.2 for 123138257	hvu-r.1 for 123401861	hvu-r.1 for 123402758	sbi-r.1 for 110433336	sbi-r.1 for 8055610	bdi-r.1 for 100824814	bdi-r.1 for 100838793

Ortholog

Ortholog ID: 2823

Species

ath

bra

bna

ghi

cit

gma

vvi

ppo

mtr

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

Symbol

SUO

Function^*

BAH and TFIIS domain-containing protein

protein SUO

uncharacterized LOC103837431

uncharacterized LOC103837430

uncharacterized LOC125598859

uncharacterized LOC106362715

uncharacterized LOC125598862

uncharacterized LOC107944116

uncharacterized LOC107902540

uncharacterized LOC102607943

uncharacterized LOC102607643

uncharacterized LOC112998769

uncharacterized LOC100806155

uncharacterized LOC100788512

uncharacterized LOC100248456

uncharacterized LOC100252575

uncharacterized LOC7458023

uncharacterized LOC7474885

uncharacterized LOC7474882

uncharacterized LOC25495221

BAH domain-containing protein, putative

uncharacterized LOC101252674

uncharacterized LOC102588004

uncharacterized LOC107821904

uncharacterized LOC107810712

uncharacterized LOC107791989

uncharacterized LOC4330691

uncharacterized LOC4330692

uncharacterized LOC103637703

uncharacterized LOC103652964

uncharacterized LOC103638899

uncharacterized LOC123145514

endochitinase A

uncharacterized LOC123128394

microtubule-associated protein futsch-like

uncharacterized LOC123402758

uncharacterized LOC110433336

uncharacterized LOC8055610

uncharacterized LOC100824814

uncharacterized LOC100838793

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03015	mRNA surveillance pathway	3
bra00562	Inositol phosphate metabolism	2
bra04070	Phosphatidylinositol signaling system	2
bra03083	Polycomb repressive complex	2
bra03250	Viral life cycle - HIV-1	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna04141	Protein processing in endoplasmic reticulum	2
bna03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna04141	Protein processing in endoplasmic reticulum	2
bna00270	Cysteine and methionine metabolism	2
bna04148	Efferocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03040	Spliceosome	5
cit04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma04136	Autophagy - other	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04120	Ubiquitin mediated proteolysis	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04120	Ubiquitin mediated proteolysis	3
ppo03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly04120	Ubiquitin mediated proteolysis	2
sly03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03082	ATP-dependent chromatin remodeling	2
nta04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma04712	Circadian rhythm - plant	2
zma03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00620	Pyruvate metabolism	3
tae00710	Carbon fixation by Calvin cycle	3
tae01200	Carbon metabolism	3
tae04136	Autophagy - other	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03040	Spliceosome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae04712	Circadian rhythm - plant	2

Expression

Expression pattern

Entrez Gene ID^*

823961

823960

103837431

103837430

125598859

106362715

125598862

107944116

107902540

102607943

102607643

112998769

100806155

100788512

100248456

100252575

7458023

7474885

7474882

25495221

101255308

101252674

102588004

107821904

107810712

107791989

4330691

4330692

103637703

103652964

103638899

123145514

123145513

123128394

123401861

123402758

110433336

8055610

100824814

100838793

The preparation time of this page was 1.3 [sec].


Species	ath	bra	bna	ghi	cit	gma	vvi	ppo	mtr	sly	sot	nta	osa	zma	tae	hvu	sbi	bdi	cre
Paralog	4	2	3	3	2	3	2	3	1	2	1	3	2	3	3	2	2	2	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to AT3G48060 (ath-u.5 coexpression data)

Top 50 enrichment test to AT3G48060 (ath-u.5 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**