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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-u.5   RID3   Transducin/WD40 repeat-like superfamily protein 
 ath-r.7   RID3   Transducin/WD40 repeat-like superfamily protein 
 ath-m.9   RID3   Transducin/WD40 repeat-like superfamily protein 
 ath-e.2   RID3   Transducin/WD40 repeat-like superfamily protein 
 ath-m.4.bio   RID3   Transducin/WD40 repeat-like superfamily protein 
 ath-m.4.hor   RID3   Transducin/WD40 repeat-like superfamily protein 
 ath-m.4.lig   RID3   Transducin/WD40 repeat-like superfamily protein 
 ath-m.4.str   RID3   Transducin/WD40 repeat-like superfamily protein 
 ath-m.4.tis   RID3   Transducin/WD40 repeat-like superfamily protein 
 gma-u.5   100791195   protein ROOT INITIATION DEFECTIVE 3 
 gma-u.5   100775776   protein ROOT INITIATION DEFECTIVE 3 
 vvi-u.5   100264347   protein ROOT INITIATION DEFECTIVE 3 
 ppo-u.5   18104875   protein ROOT INITIATION DEFECTIVE 3 
 mtr-u.5   25482697   protein ROOT INITIATION DEFECTIVE 3 
 mtr-u.5   11434801   protein ROOT INITIATION DEFECTIVE 3 
 sly-u.5   101251281   protein ROOT INITIATION DEFECTIVE 3 
 osa-u.5   4342993   protein ROOT INITIATION DEFECTIVE 3 
 zma-u.5   100280249   Protein ROOT INITIATION DEFECTIVE 3 

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Top 50 coexpressed genes to RID3 (ath-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to RID3 (ath-u.5 coexpression data)

CoexMap"824079"


athRID3 | Entrez gene ID : 824079      
Species ath gma vvi ppo mtr sly osa zma sbi nta bra cre hvu cit bdi sot tae bna ghi
Paralog 9 2 1 1 2 1 1 1 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:1902184 [list] [network] negative regulation of shoot apical meristem development  (1 genes)  IMP  
GO CC
GO:0080008 [list] [network] Cul4-RING E3 ubiquitin ligase complex  (121 genes)  ISS  
GO:0005737 [list] [network] cytoplasm  (14000 genes)  ISM  
GO MF
Protein NP_190487.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 6,  cyto 3  (predict for NP_190487.1)
Subcellular
localization
TargetP
other 8,  chlo 3  (predict for NP_190487.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-u.5
for
RID3

.
ath-r.7
for
RID3

.
ath-m.9
for
RID3

.
ath-e.2
for
RID3

.
ath-m.4.bio
for
RID3

.
ath-m.4.hor
for
RID3

.
ath-m.4.lig
for
RID3

.
ath-m.4.str
for
RID3

.
ath-m.4.tis
for
RID3

.
gma-u.5
for
100791195

.
gma-u.5
for
100775776

.
vvi-u.5
for
100264347

.
ppo-u.5
for
18104875

.
mtr-u.5
for
25482697

.
mtr-u.5
for
11434801

.
sly-u.5
for
101251281

.
osa-u.5
for
4342993

.
zma-u.5
for
100280249

.


Ortholog ID: 8975
Species ath gma gma sly osa zma bra vvi ppo mtr mtr tae tae hvu ghi ghi bna bna cre sbi sot cit bdi nta nta
Symbol RID3 LOC100775776 LOC100791195 LOC101251281 LOC4342993 LOC100280249 LOC103875138 LOC100264347 LOC18104875 LOC11434801 LOC25482697 LOC123166236 LOC123148102 LOC123409101 LOC107944611 LOC107941566 LOC106397229 LOC106385029 CHLRE_06g251350v5 LOC8063613 LOC102593161 LOC102607043 LOC100843279 LOC107774513 LOC107817903
Function* Transducin/WD40 repeat-like superfamily protein protein ROOT INITIATION DEFECTIVE 3 protein ROOT INITIATION DEFECTIVE 3 protein ROOT INITIATION DEFECTIVE 3 protein ROOT INITIATION DEFECTIVE 3 Protein ROOT INITIATION DEFECTIVE 3 protein ROOT INITIATION DEFECTIVE 3 protein ROOT INITIATION DEFECTIVE 3 protein ROOT INITIATION DEFECTIVE 3 protein ROOT INITIATION DEFECTIVE 3 protein ROOT INITIATION DEFECTIVE 3 protein ROOT INITIATION DEFECTIVE 3 protein ROOT INITIATION DEFECTIVE 3 protein ROOT INITIATION DEFECTIVE 3 protein ROOT INITIATION DEFECTIVE 3 protein ROOT INITIATION DEFECTIVE 3 protein ROOT INITIATION DEFECTIVE 3 protein ROOT INITIATION DEFECTIVE 3 uncharacterized protein protein ROOT INITIATION DEFECTIVE 3 protein ROOT INITIATION DEFECTIVE 3 protein ROOT INITIATION DEFECTIVE 3 protein ROOT INITIATION DEFECTIVE 3 protein ROOT INITIATION DEFECTIVE 3-like protein ROOT INITIATION DEFECTIVE 3
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03008 Ribosome biogenesis in eukaryotes 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00970 Aminoacyl-tRNA biosynthesis 4
osa03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03008 Ribosome biogenesis in eukaryotes 2
bra03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03010 Ribosome 5
vvi00230 Purine metabolism 3
vvi01232 Nucleotide metabolism 2
vvi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03008 Ribosome biogenesis in eukaryotes 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03040 Spliceosome 4
mtr03013 Nucleocytoplasmic transport 3
mtr03008 Ribosome biogenesis in eukaryotes 2
mtr01240 Biosynthesis of cofactors 2
mtr03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03008 Ribosome biogenesis in eukaryotes 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03008 Ribosome biogenesis in eukaryotes 9
tae03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03008 Ribosome biogenesis in eukaryotes 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03018 RNA degradation 3
hvu03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00260 Glycine, serine and threonine metabolism 4
bna00460 Cyanoamino acid metabolism 4
bna00630 Glyoxylate and dicarboxylate metabolism 4
bna00670 One carbon pool by folate 4
bna01200 Carbon metabolism 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04626 Plant-pathogen interaction 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03008 Ribosome biogenesis in eukaryotes 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03008 Ribosome biogenesis in eukaryotes 3
sot00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03008 Ribosome biogenesis in eukaryotes 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03010 Ribosome 4
nta04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03010 Ribosome 7
nta03008 Ribosome biogenesis in eukaryotes 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 824079 100775776 100791195 101251281 4342993 100280249 103875138 100264347 18104875 11434801 25482697 123166236 123148102 123409101 107944611 107941566 106397229 106385029 5722194 8063613 102593161 102607043 100843279 107774513 107817903
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