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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-u.5   LSU1   response to low sulfur 1 
 ath-r.7   LSU1   response to low sulfur 1 
 ath-m.9   LSU1   response to low sulfur 1 
 ath-e.2   LSU1   response to low sulfur 1 
 ath-m.4.bio   LSU1   response to low sulfur 1 
 ath-m.4.hor   LSU1   response to low sulfur 1 
 ath-m.4.lig   LSU1   response to low sulfur 1 
 ath-m.4.str   LSU1   response to low sulfur 1 
 ath-m.4.tis   LSU1   response to low sulfur 1 
 ath-u.5   LSU3   response to low sulfur 3 
 ath-u.5   LSU4   response to low sulfur 4 
 ath-u.5   LSU2   response to low sulfur 2 
 bra-r.6   103874333   protein RESPONSE TO LOW SULFUR 2 
 bra-r.6   103873048   protein RESPONSE TO LOW SULFUR 3 
 bra-r.6   103854791   protein RESPONSE TO LOW SULFUR 2-like 
 bna-r.1   106425589   protein RESPONSE TO LOW SULFUR 2-like 
 bna-r.1   106417649   protein RESPONSE TO LOW SULFUR 3 
 bna-r.1   106380057   protein RESPONSE TO LOW SULFUR 2-like 
 ghi-r.1   107912206   protein RESPONSE TO LOW SULFUR 3 
 ghi-r.1   107921084   protein RESPONSE TO LOW SULFUR 3 
 ghi-r.1   107921290   protein RESPONSE TO LOW SULFUR 3 
 cit-r.1   102628505   hypothetical protein 
 gma-u.5   100804573   protein RESPONSE TO LOW SULFUR 3 
 gma-u.5   100813653   protein RESPONSE TO LOW SULFUR 3 
 gma-u.5   100820369   protein RESPONSE TO LOW SULFUR 3 
 vvi-u.5   100267499   protein RESPONSE TO LOW SULFUR 3-like 
 ppo-u.5   7464483   protein RESPONSE TO LOW SULFUR 2 
 ppo-u.5   7486705   protein RESPONSE TO LOW SULFUR 2 
 mtr-u.5   11424580   protein RESPONSE TO LOW SULFUR 3 
 sly-u.5   101243970   protein RESPONSE TO LOW SULFUR 2-like 
 sly-u.5   101268660   protein RESPONSE TO LOW SULFUR 3-like 
 sot-r.1   102578639   uncharacterized LOC102578639 
 sot-r.1   102598055   uncharacterized LOC102598055 
 sot-r.1   102598380   ribonuclease Y-like 
 nta-r.1   107831593   protein RESPONSE TO LOW SULFUR 1 
 nta-r.1   107803784   protein RESPONSE TO LOW SULFUR 1 
 nta-r.1   107768936   protein RESPONSE TO LOW SULFUR 3 
 osa-u.5   9269286   protein RESPONSE TO LOW SULFUR 3 
 osa-u.5   4328185   protein RESPONSE TO LOW SULFUR 3 
 osa-u.5   4349083   protein RESPONSE TO LOW SULFUR 3 
 zma-u.5   100274353   uncharacterized LOC100274353 
 zma-u.5   100274648   response to low sulfur 3 
 zma-u.5   109943750   protein RESPONSE TO LOW SULFUR 3 
 tae-r.2   123168116   protein RESPONSE TO LOW SULFUR 3 
 tae-r.2   123141067   protein RESPONSE TO LOW SULFUR 1 
 tae-r.2   123048673   protein RESPONSE TO LOW SULFUR 2 
 hvu-r.1   123434448   protein RESPONSE TO LOW SULFUR 3-like 
 hvu-r.1   123402564   protein RESPONSE TO LOW SULFUR 2-like 
 sbi-r.1   8065180   protein RESPONSE TO LOW SULFUR 4 
 sbi-r.1   8069917   protein RESPONSE TO LOW SULFUR 3 
 sbi-r.1   8054954   protein RESPONSE TO LOW SULFUR 3 
 bdi-r.1   100832460   protein RESPONSE TO LOW SULFUR 2 

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Top 50 coexpressed genes to LSU1 (ath-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to LSU1 (ath-u.5 coexpression data)

CoexMap"824120"


athLSU1 | Entrez gene ID : 824120      
Species ath bra bna ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 12 3 3 3 1 3 1 2 1 2 3 3 3 3 3 2 3 1 0
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0010438 [list] [network] cellular response to sulfur starvation  (11 genes)  IEP  
GO:0098869 [list] [network] cellular oxidant detoxification  (26 genes)  IEA  
GO:0009651 [list] [network] response to salt stress  (473 genes)  IEP  
GO CC
GO:0005634 [list] [network] nucleus  (10367 genes)  IDA ISM  
GO:0005737 [list] [network] cytoplasm  (14000 genes)  IDA  
GO MF
GO:0005515 [list] [network] protein binding  (5363 genes)  IPI  
Protein NP_001190042.1 [sequence] [blastp]
NP_001327932.1 [sequence] [blastp]
NP_190527.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 6,  nucl 2,  cyto 1,  plas 1,  pero 1,  cyto_pero 1,  cyto_plas 1  (predict for NP_001190042.1)
chlo 6,  cyto 4  (predict for NP_001327932.1)
chlo 8,  nucl 1,  plas 1,  pero 1,  nucl_plas 1  (predict for NP_190527.1)
Subcellular
localization
TargetP
other 6  (predict for NP_001190042.1)
other 7  (predict for NP_001327932.1)
other 7  (predict for NP_190527.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-u.5
for
LSU1
ath-r.7
for
LSU1
ath-m.9
for
LSU1
ath-e.2
for
LSU1
ath-m.4.bio
for
LSU1
ath-m.4.hor
for
LSU1
ath-m.4.lig
for
LSU1
ath-m.4.str
for
LSU1
ath-m.4.tis
for
LSU1
ath-u.5
for
LSU3
ath-u.5
for
LSU4
ath-u.5
for
LSU2
bra-r.6
for
103874333
bra-r.6
for
103873048
bra-r.6
for
103854791
bna-r.1
for
106425589
bna-r.1
for
106417649
bna-r.1
for
106380057
ghi-r.1
for
107912206
ghi-r.1
for
107921084
ghi-r.1
for
107921290
cit-r.1
for
102628505
gma-u.5
for
100804573
gma-u.5
for
100813653
gma-u.5
for
100820369
vvi-u.5
for
100267499
ppo-u.5
for
7464483
ppo-u.5
for
7486705
mtr-u.5
for
11424580
sly-u.5
for
101243970
sly-u.5
for
101268660
sot-r.1
for
102578639
sot-r.1
for
102598055
sot-r.1
for
102598380
nta-r.1
for
107831593
nta-r.1
for
107803784
nta-r.1
for
107768936
osa-u.5
for
9269286
osa-u.5
for
4328185
osa-u.5
for
4349083
zma-u.5
for
100274353
zma-u.5
for
100274648
zma-u.5
for
109943750
tae-r.2
for
123168116
tae-r.2
for
123141067
tae-r.2
for
123048673
hvu-r.1
for
123434448
hvu-r.1
for
123402564
sbi-r.1
for
8065180
sbi-r.1
for
8069917
sbi-r.1
for
8054954
bdi-r.1
for
100832460


Ortholog ID: 2653
Species ath ath ath bra bra bra bna bna bna ghi ghi ghi cit gma gma gma vvi ppo ppo mtr sly sly sot sot sot nta nta nta osa osa osa zma zma zma tae tae tae hvu hvu sbi sbi sbi bdi
Symbol LSU3 LSU4 LSU2 LOC103874333 LOC103873048 LOC103873047 LOC106380057 BNAA06G15780D BNAA06G15800D LOC107912206 LOC107921084 LOC107921290 LOC102628505 LOC100804573 LOC100813653 LOC100820369 LOC100267499 LOC7464483 LOC7486705 LOC11424580 LOC101243970 LOC101243684 LOC102578639 LOC102598055 LOC102598720 LOC107831593 LOC107803784 LOC107768936 LOC9269286 LOC4328185 LOC4349083 LOC100274353 LOC100274648 LOC109943750 LOC123168116 LOC123130260 LOC123124800 LOC123434448 LOC123402564 LOC8065180 LOC8069917 LOC8054954 LOC100832460
Function* response to low sulfur 3 response to low sulfur 4 response to low sulfur 2 protein RESPONSE TO LOW SULFUR 2 protein RESPONSE TO LOW SULFUR 3 protein RESPONSE TO LOW SULFUR 3 protein RESPONSE TO LOW SULFUR 2-like protein RESPONSE TO LOW SULFUR 3 protein RESPONSE TO LOW SULFUR 3 protein RESPONSE TO LOW SULFUR 3 protein RESPONSE TO LOW SULFUR 3 protein RESPONSE TO LOW SULFUR 3 hypothetical protein protein RESPONSE TO LOW SULFUR 3 protein RESPONSE TO LOW SULFUR 3 protein RESPONSE TO LOW SULFUR 3 protein RESPONSE TO LOW SULFUR 3-like protein RESPONSE TO LOW SULFUR 2 protein RESPONSE TO LOW SULFUR 2 protein RESPONSE TO LOW SULFUR 3 protein RESPONSE TO LOW SULFUR 2-like protein RESPONSE TO LOW SULFUR 3-like uncharacterized LOC102578639 uncharacterized LOC102598055 uncharacterized LOC102598720 protein RESPONSE TO LOW SULFUR 1 protein RESPONSE TO LOW SULFUR 1 protein RESPONSE TO LOW SULFUR 3 protein RESPONSE TO LOW SULFUR 3 protein RESPONSE TO LOW SULFUR 3 protein RESPONSE TO LOW SULFUR 3 uncharacterized LOC100274353 response to low sulfur 3 protein RESPONSE TO LOW SULFUR 3 protein RESPONSE TO LOW SULFUR 3 protein RESPONSE TO LOW SULFUR 1 protein RESPONSE TO LOW SULFUR 2 protein RESPONSE TO LOW SULFUR 3-like protein RESPONSE TO LOW SULFUR 2-like protein RESPONSE TO LOW SULFUR 4 protein RESPONSE TO LOW SULFUR 3 protein RESPONSE TO LOW SULFUR 3 protein RESPONSE TO LOW SULFUR 2
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00920 Sulfur metabolism 4
ath01320 Sulfur cycle 3
ath01200 Carbon metabolism 3
ath00270 Cysteine and methionine metabolism 2
ath01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00260 Glycine, serine and threonine metabolism 2
ath00270 Cysteine and methionine metabolism 2
ath00630 Glyoxylate and dicarboxylate metabolism 2
ath01200 Carbon metabolism 2
ath00460 Cyanoamino acid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00920 Sulfur metabolism 4
ath01320 Sulfur cycle 3
ath01200 Carbon metabolism 3
ath00270 Cysteine and methionine metabolism 2
ath01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00920 Sulfur metabolism 4
bra01320 Sulfur cycle 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00920 Sulfur metabolism 4
bra01320 Sulfur cycle 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00920 Sulfur metabolism 6
bna01320 Sulfur cycle 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00920 Sulfur metabolism 6
bna01320 Sulfur cycle 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00270 Cysteine and methionine metabolism 3
ghi00543 Exopolysaccharide biosynthesis 2
ghi00920 Sulfur metabolism 2
ghi01200 Carbon metabolism 2
ghi01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi01200 Carbon metabolism 3
ghi01230 Biosynthesis of amino acids 3
ghi00270 Cysteine and methionine metabolism 3
ghi00543 Exopolysaccharide biosynthesis 2
ghi00920 Sulfur metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi01200 Carbon metabolism 3
ghi01230 Biosynthesis of amino acids 3
ghi00270 Cysteine and methionine metabolism 3
ghi00543 Exopolysaccharide biosynthesis 2
ghi00920 Sulfur metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00270 Cysteine and methionine metabolism 3
cit00920 Sulfur metabolism 3
cit01320 Sulfur cycle 3
cit00670 One carbon pool by folate 2
cit04981 Folate transport and metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00260 Glycine, serine and threonine metabolism 3
gma00630 Glyoxylate and dicarboxylate metabolism 3
gma01200 Carbon metabolism 3
gma00670 One carbon pool by folate 3
gma04981 Folate transport and metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00920 Sulfur metabolism 3
gma01320 Sulfur cycle 3
gma00670 One carbon pool by folate 3
gma04981 Folate transport and metabolism 3
gma00260 Glycine, serine and threonine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00920 Sulfur metabolism 3
gma01320 Sulfur cycle 3
gma00670 One carbon pool by folate 3
gma04981 Folate transport and metabolism 3
gma04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00920 Sulfur metabolism 4
vvi01320 Sulfur cycle 4
vvi00230 Purine metabolism 2
vvi00261 Monobactam biosynthesis 2
vvi00450 Selenocompound metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00920 Sulfur metabolism 5
ppo01320 Sulfur cycle 5
ppo00480 Glutathione metabolism 3
ppo00230 Purine metabolism 2
ppo00261 Monobactam biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00920 Sulfur metabolism 5
ppo01320 Sulfur cycle 4
ppo00480 Glutathione metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00480 Glutathione metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00920 Sulfur metabolism 6
sly01320 Sulfur cycle 4
sly01230 Biosynthesis of amino acids 3
sly00270 Cysteine and methionine metabolism 2
sly00670 One carbon pool by folate 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00920 Sulfur metabolism 7
sly01320 Sulfur cycle 6
sly01230 Biosynthesis of amino acids 3
sly01240 Biosynthesis of cofactors 3
sly00270 Cysteine and methionine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00920 Sulfur metabolism 5
sot01320 Sulfur cycle 4
sot00670 One carbon pool by folate 2
sot01230 Biosynthesis of amino acids 2
sot01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00920 Sulfur metabolism 6
sot01320 Sulfur cycle 4
sot01230 Biosynthesis of amino acids 3
sot00670 One carbon pool by folate 2
sot01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00920 Sulfur metabolism 5
sot01320 Sulfur cycle 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00920 Sulfur metabolism 2
nta01320 Sulfur cycle 2
nta04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00920 Sulfur metabolism 2
nta01320 Sulfur cycle 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00920 Sulfur metabolism 6
nta01320 Sulfur cycle 6
nta00260 Glycine, serine and threonine metabolism 2
nta00460 Cyanoamino acid metabolism 2
nta00630 Glyoxylate and dicarboxylate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00920 Sulfur metabolism 3
osa01320 Sulfur cycle 3
osa00670 One carbon pool by folate 2
osa01200 Carbon metabolism 2
osa01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00920 Sulfur metabolism 4
osa01320 Sulfur cycle 4
osa04016 MAPK signaling pathway - plant 2
osa04075 Plant hormone signal transduction 2
osa00670 One carbon pool by folate 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00920 Sulfur metabolism 3
osa01320 Sulfur cycle 3
osa00670 One carbon pool by folate 2
osa01200 Carbon metabolism 2
osa01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00920 Sulfur metabolism 2
zma01320 Sulfur cycle 2
zma00770 Pantothenate and CoA biosynthesis 2
zma01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00920 Sulfur metabolism 3
zma01320 Sulfur cycle 3
zma01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00920 Sulfur metabolism 3
zma01320 Sulfur cycle 3
zma00670 One carbon pool by folate 2
zma04981 Folate transport and metabolism 2
zma01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00260 Glycine, serine and threonine metabolism 3
tae00460 Cyanoamino acid metabolism 3
tae00630 Glyoxylate and dicarboxylate metabolism 3
tae00670 One carbon pool by folate 3
tae01200 Carbon metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00920 Sulfur metabolism 3
tae01320 Sulfur cycle 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00260 Glycine, serine and threonine metabolism 3
tae00460 Cyanoamino acid metabolism 3
tae00630 Glyoxylate and dicarboxylate metabolism 3
tae00670 One carbon pool by folate 3
tae01200 Carbon metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00920 Sulfur metabolism 3
hvu01320 Sulfur cycle 3
hvu00670 One carbon pool by folate 2
hvu04981 Folate transport and metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00920 Sulfur metabolism 2
hvu01320 Sulfur cycle 2
hvu00670 One carbon pool by folate 2
hvu01200 Carbon metabolism 2
hvu01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00920 Sulfur metabolism 3
sbi01320 Sulfur cycle 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00920 Sulfur metabolism 3
sbi01320 Sulfur cycle 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00920 Sulfur metabolism 3
sbi01320 Sulfur cycle 3
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 824119 832537 832538 103874333 103873048 103873047 106380057 106351623 106351625 107912206 107921084 107921290 102628505 100804573 100813653 100820369 100267499 7464483 7486705 11424580 101243970 101243684 102578639 102598055 102598720 107831593 107803784 107768936 9269286 4328185 4349083 100274353 100274648 109943750 123168116 123130260 123124800 123434448 123402564 8065180 8069917 8054954 100832460
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