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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-u.5   PAS1   FKBP-type peptidyl-prolyl cis-trans isomerase family protein 
 ath-r.7   PAS1   FKBP-type peptidyl-prolyl cis-trans isomerase family protein 
 ath-m.9   PAS1   FKBP-type peptidyl-prolyl cis-trans isomerase family protein 
 ath-e.2   PAS1   FKBP-type peptidyl-prolyl cis-trans isomerase family protein 
 ath-m.4.bio   PAS1   FKBP-type peptidyl-prolyl cis-trans isomerase family protein 
 ath-m.4.hor   PAS1   FKBP-type peptidyl-prolyl cis-trans isomerase family protein 
 ath-m.4.lig   PAS1   FKBP-type peptidyl-prolyl cis-trans isomerase family protein 
 ath-m.4.str   PAS1   FKBP-type peptidyl-prolyl cis-trans isomerase family protein 
 ath-m.4.tis   PAS1   FKBP-type peptidyl-prolyl cis-trans isomerase family protein 
 gma-u.5   100818201   peptidyl-prolyl cis-trans isomerase PASTICCINO1 
 gma-u.5   100527937   FKBP-type peptidyl-prolyl cis-trans isomerase family protein 
 vvi-u.5   100249394   peptidyl-prolyl cis-trans isomerase PASTICCINO1 
 ppo-u.5   7486539   peptidyl-prolyl cis-trans isomerase PASTICCINO1 
 mtr-u.5   11418774   peptidyl-prolyl cis-trans isomerase PASTICCINO1 
 mtr-u.5   120580160   peptidyl-prolyl cis-trans isomerase PASTICCINO1 
 sly-u.5   FKBP72   peptidyl-prolyl cis-trans isomerase FKBP72 
 osa-u.5   4332918   peptidyl-prolyl cis-trans isomerase PASTICCINO1 
 zma-u.5   103635345   uncharacterized LOC103635345 
 zma-u.5   100282570   peptidyl-prolyl isomerase PASTICCINO1 

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Top 50 coexpressed genes to PAS1 (ath-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to PAS1 (ath-u.5 coexpression data)

CoexMap"824568"


athPAS1 | Entrez gene ID : 824568      
Species ath gma vvi ppo mtr sly osa zma bdi hvu bra cit bna sbi ghi sot nta cre tae
Paralog 9 2 1 1 2 1 1 2 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0030010 [list] [network] establishment of cell polarity  (6 genes)  IMP  
GO:0042761 [list] [network] very long-chain fatty acid biosynthetic process  (18 genes)  IMP  
GO:0009880 [list] [network] embryonic pattern specification  (26 genes)  IMP  
GO:0009735 [list] [network] response to cytokinin  (124 genes)  IMP  
GO:0048527 [list] [network] lateral root development  (131 genes)  IMP  
GO:0009826 [list] [network] unidimensional cell growth  (310 genes)  IMP  
GO:0009793 [list] [network] embryo development ending in seed dormancy  (569 genes)  IMP  
GO:0048364 [list] [network] root development  (600 genes)  IMP  
GO:0030154 [list] [network] cell differentiation  (627 genes)  IMP  
GO CC
GO:0005783 [list] [network] endoplasmic reticulum  (897 genes)  IDA  
GO:0005634 [list] [network] nucleus  (10367 genes)  ISM ISS  
GO MF
GO:0005515 [list] [network] protein binding  (5363 genes)  IPI  
Protein NP_566993.1 [sequence] [blastp]
NP_850701.1 [sequence] [blastp]
Subcellular
localization
wolf
cyto 6,  nucl 1,  vacu 1,  plas 1,  golg 1,  cysk_nucl 1,  golg_plas 1,  E.R._vacu 1  (predict for NP_566993.1)
cyto 6,  nucl 1,  plas 1,  E.R. 1,  pero 1,  golg 1,  nucl_plas 1,  golg_plas 1,  E.R._plas 1  (predict for NP_850701.1)
Subcellular
localization
TargetP
other 9  (predict for NP_566993.1)
other 8  (predict for NP_850701.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-u.5
for
PAS1
ath-r.7
for
PAS1
ath-m.9
for
PAS1
ath-e.2
for
PAS1
ath-m.4.bio
for
PAS1
ath-m.4.hor
for
PAS1
ath-m.4.lig
for
PAS1
ath-m.4.str
for
PAS1
ath-m.4.tis
for
PAS1
gma-u.5
for
100818201
gma-u.5
for
100527937
vvi-u.5
for
100249394
ppo-u.5
for
7486539
mtr-u.5
for
11418774
mtr-u.5
for
120580160
sly-u.5
for
FKBP72
osa-u.5
for
4332918
zma-u.5
for
103635345
zma-u.5
for
100282570


Ortholog ID: 7618
Species ath bra bra bna bna ghi ghi cit gma gma vvi ppo mtr mtr sly sot nta nta osa zma zma tae tae hvu sbi bdi cre
Symbol PAS1 LOC103829960 LOC103863269 LOC106411385 LOC106368667 LOC107890999 LOC107889741 LOC102624416 LOC100818201 LOC100527937 LOC100249394 LOC7486539 LOC120580160 LOC11418774 FKBP72 LOC102595562 LOC107811156 LOC107782047 LOC4332918 LOC103635345 LOC100282570 LOC123181417 LOC123123428 LOC123448584 LOC8080781 LOC100836065 CHLRE_01g017200v5
Function* FKBP-type peptidyl-prolyl cis-trans isomerase family protein peptidyl-prolyl cis-trans isomerase PASTICCINO1 peptidyl-prolyl cis-trans isomerase PASTICCINO1 peptidyl-prolyl cis-trans isomerase PASTICCINO1-like peptidyl-prolyl cis-trans isomerase PASTICCINO1-like peptidyl-prolyl cis-trans isomerase PASTICCINO1 peptidyl-prolyl cis-trans isomerase PASTICCINO1 peptidyl-prolyl cis-trans isomerase PASTICCINO1 peptidyl-prolyl cis-trans isomerase PASTICCINO1 FKBP-type peptidyl-prolyl cis-trans isomerase family protein peptidyl-prolyl cis-trans isomerase PASTICCINO1 peptidyl-prolyl cis-trans isomerase PASTICCINO1 peptidyl-prolyl cis-trans isomerase PASTICCINO1 peptidyl-prolyl cis-trans isomerase PASTICCINO1 peptidyl-prolyl cis-trans isomerase FKBP72 peptidyl-prolyl cis-trans isomerase PASTICCINO1 peptidyl-prolyl cis-trans isomerase PASTICCINO1-like peptidyl-prolyl cis-trans isomerase PASTICCINO1 peptidyl-prolyl cis-trans isomerase PASTICCINO1 uncharacterized LOC103635345 peptidyl-prolyl isomerase PASTICCINO1 peptidyl-prolyl cis-trans isomerase PASTICCINO1 peptidyl-prolyl cis-trans isomerase PASTICCINO1 peptidyl-prolyl cis-trans isomerase PASTICCINO1 peptidyl-prolyl cis-trans isomerase PASTICCINO1 peptidyl-prolyl cis-trans isomerase PASTICCINO1 uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04141 Protein processing in endoplasmic reticulum 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03040 Spliceosome 2
bna03013 Nucleocytoplasmic transport 2
bna03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03040 Spliceosome 2
ghi04626 Plant-pathogen interaction 2
ghi04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03040 Spliceosome 2
ghi04626 Plant-pathogen interaction 2
ghi04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03013 Nucleocytoplasmic transport 2
gma03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04130 SNARE interactions in vesicular transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03040 Spliceosome 6
mtr03022 Basal transcription factors 2
mtr03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00020 Citrate cycle (TCA cycle) 5
sot01200 Carbon metabolism 5
sot00620 Pyruvate metabolism 4
sot01210 2-Oxocarboxylic acid metabolism 4
sot00010 Glycolysis / Gluconeogenesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03420 Nucleotide excision repair 2
nta04120 Ubiquitin mediated proteolysis 2
nta04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03420 Nucleotide excision repair 2
nta04120 Ubiquitin mediated proteolysis 2
nta04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04626 Plant-pathogen interaction 3
osa04141 Protein processing in endoplasmic reticulum 3
osa00510 N-Glycan biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00020 Citrate cycle (TCA cycle) 3
tae00480 Glutathione metabolism 3
tae01200 Carbon metabolism 3
tae01210 2-Oxocarboxylic acid metabolism 3
tae01230 Biosynthesis of amino acids 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu04141 Protein processing in endoplasmic reticulum 2
hvu03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi04075 Plant hormone signal transduction 2
bdi04144 Endocytosis 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 824568 103829960 103863269 106411385 106368667 107890999 107889741 102624416 100818201 100527937 100249394 7486539 120580160 11418774 101262070 102595562 107811156 107782047 4332918 103635345 100282570 123181417 123123428 123448584 8080781 100836065 5715141
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