ATTED-II : GeneCoexpression result

Species	Gene	Description
ath-u.5	AT3G55070	LisH/CRA/RING-U-box domains-containing protein
ath-r.7	AT3G55070	LisH/CRA/RING-U-box domains-containing protein
ath-m.9	AT3G55070	LisH/CRA/RING-U-box domains-containing protein
ath-e.2	AT3G55070	LisH/CRA/RING-U-box domains-containing protein
ath-m.4.bio	AT3G55070	LisH/CRA/RING-U-box domains-containing protein
ath-m.4.hor	AT3G55070	LisH/CRA/RING-U-box domains-containing protein
ath-m.4.lig	AT3G55070	LisH/CRA/RING-U-box domains-containing protein
ath-m.4.str	AT3G55070	LisH/CRA/RING-U-box domains-containing protein
ath-m.4.tis	AT3G55070	LisH/CRA/RING-U-box domains-containing protein
gma-u.5	100805248	uncharacterized LOC100805248
gma-u.5	100779522	protein MAEA homolog
vvi-u.5	100257054	protein MAEA homolog
ppo-u.5	7469785	protein MAEA homolog
mtr-u.5	25485750	protein MAEA homolog
sly-u.5	101243883	macrophage erythroblast attacher
osa-u.5	4337882	protein MAEA homolog
zma-u.5	100279208	uncharacterized LOC100279208

Annotation

functional annotation

KEGG

GO BP

GO CC

GO:0005634 [list] [network] nucleus	(10367 genes)	ISM
GO:0005737 [list] [network] cytoplasm	(14000 genes)	IDA

GO MF

GO:0061630 [list] [network] ubiquitin protein ligase activity	(83 genes)	IEA
GO:0004842 [list] [network] ubiquitin-protein transferase activity	(268 genes)	IEA
GO:0005515 [list] [network] protein binding	(5363 genes)	IPI

Protein

NP_001078291.1 [sequence] [blastp]
NP_191067.1 [sequence] [blastp]

Subcellular
localization
wolf

cyto 5, nucl 3, cysk 1, nucl_plas 1	(predict for NP_001078291.1)
cyto 5, nucl 4, chlo 1	(predict for NP_191067.1)

Subcellular
localization
TargetP

chlo 8, other 5	(predict for NP_001078291.1)
chlo 8, other 5	(predict for NP_191067.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target				Condition-specific^*					Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	ath-u.5 for AT3G55070	ath-r.7 for AT3G55070	ath-m.9 for AT3G55070	ath-e.2 for AT3G55070	ath-m.4.bio for AT3G55070	ath-m.4.hor for AT3G55070	ath-m.4.lig for AT3G55070	ath-m.4.str for AT3G55070	ath-m.4.tis for AT3G55070	gma-u.5 for 100805248	gma-u.5 for 100779522	vvi-u.5 for 100257054	ppo-u.5 for 7469785	mtr-u.5 for 25485750	sly-u.5 for 101243883	osa-u.5 for 4337882	zma-u.5 for 100279208

Ortholog

Ortholog ID: 7624

Species

ath

bra

bna

ghi

cit

gma

vvi

ppo

mtr

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

cre

Symbol

Function^*

LisH/CRA/RING-U-box domains-containing protein

protein MAEA homolog

uncharacterized LOC100805248

protein MAEA homolog

macrophage erythroblast attacher

protein MAEA homolog

uncharacterized LOC100279208

protein MAEA homolog

macrophage erythroblast attacher

protein MAEA homolog

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath04136	Autophagy - other	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi04136	Autophagy - other	4
vvi04144	Endocytosis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04120	Ubiquitin mediated proteolysis	3
ppo00410	beta-Alanine metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04016	MAPK signaling pathway - plant	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04016	MAPK signaling pathway - plant	3
nta03022	Basal transcription factors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa04136	Autophagy - other	3
osa00600	Sphingolipid metabolism	2
osa04142	Lysosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma04136	Autophagy - other	2
zma03420	Nucleotide excision repair	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03015	mRNA surveillance pathway	3
tae04382	Cornified envelope formation	3
tae04141	Protein processing in endoplasmic reticulum	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi04136	Autophagy - other	2

Expression

Expression pattern

Entrez Gene ID^*

824673

103841423

106445338

106391244

107934210

107957100

102610102

100779522

100805248

100257054

7469785

25485750

101243883

102582250

107823425

107831431

4337882

100279208

123180604

123114070

123426251

8080918

100830732

5721286

Select Species^**

Orthologous genes in OrthoFinder^**

Top 50 coexpressed genes to AT3G55070 (ath-u.5 coexpression data)

Top 50 enrichment test to AT3G55070 (ath-u.5 coexpression data)


Species	ath	gma	vvi	ppo	mtr	sly	osa	zma	bdi	hvu	bra	cit	bna	sbi	ghi	sot	nta	cre	tae
Paralog	9	2	1	1	1	1	1	1	0	0	0	0	0	0	0	0	0	0	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to AT3G55070 (ath-u.5 coexpression data)

Top 50 enrichment test to AT3G55070 (ath-u.5 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**