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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-u.5   AT3G56720   pre-mRNA-splicing factor 
 ath-r.7   AT3G56720   pre-mRNA-splicing factor 
 ath-m.9   AT3G56720   pre-mRNA-splicing factor 
 ath-e.2   AT3G56720   pre-mRNA-splicing factor 
 ath-m.4.bio   AT3G56720   pre-mRNA-splicing factor 
 ath-m.4.hor   AT3G56720   pre-mRNA-splicing factor 
 ath-m.4.lig   AT3G56720   pre-mRNA-splicing factor 
 ath-m.4.str   AT3G56720   pre-mRNA-splicing factor 
 ath-m.4.tis   AT3G56720   pre-mRNA-splicing factor 
 bra-r.6   103841571   arginine/serine-rich coiled-coil protein 2 
 bna-r.1   125591147   arginine/serine-rich coiled-coil protein 2-like 
 ghi-r.1   107891362   arginine/serine-rich coiled-coil protein 2 
 ghi-r.1   107889376   arginine/serine-rich coiled-coil protein 2 
 cit-r.1   102613974   uncharacterized LOC102613974 
 gma-u.5   100806966   arginine/serine-rich coiled-coil protein 2 
 gma-u.5   100798812   arginine/serine-rich coiled-coil protein 2 
 vvi-u.5   100257160   uncharacterized LOC100257160 
 ppo-u.5   7496082   uncharacterized LOC7496082 
 ppo-u.5   7464095   uncharacterized LOC7464095 
 mtr-u.5   11424300   arginine/serine-rich coiled-coil protein 2 
 sly-u.5   101247793   uncharacterized LOC101247793 
 sot-r.1   102597853   arginine/serine-rich coiled-coil protein 2 
 nta-r.1   107796830   uncharacterized LOC107796830 
 nta-r.1   107771131   uncharacterized LOC107771131 
 osa-u.5   4348955   uncharacterized LOC4348955 
 zma-u.5   100274181   uncharacterized LOC100274181 
 zma-u.5   100274004   uncharacterized LOC100274004 
 tae-r.2   123052341   uncharacterized protein DDB_G0286299 
 tae-r.2   123085196   peptidyl-prolyl cis-trans isomerase G 
 tae-r.2   123092801   nuclear speckle splicing regulatory protein 1 
 hvu-r.1   123425626   uncharacterized protein DDB_G0286299-like 
 hvu-r.1   123449180   nuclear speckle splicing regulatory protein 1-like 
 sbi-r.1   8066195   pre-mRNA-processing ATP-dependent RNA helicase prp5 
 bdi-r.1   100836225   dentin matrix acidic phosphoprotein 1 

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Top 50 coexpressed genes to AT3G56720 (ath-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to AT3G56720 (ath-u.5 coexpression data)

CoexMap"824839"


athAT3G56720 | Entrez gene ID : 824839      
Species ath bra bna ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 9 1 1 2 1 2 1 2 1 1 1 2 1 2 3 2 1 1 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO CC
GO:0005634 [list] [network] nucleus  (10367 genes)  ISM  
GO MF
Protein NP_001190106.1 [sequence] [blastp]
NP_001190107.1 [sequence] [blastp]
NP_001326861.1 [sequence] [blastp]
NP_001326862.1 [sequence] [blastp]
NP_001326863.1 [sequence] [blastp]
NP_001326864.1 [sequence] [blastp]
NP_191231.2 [sequence] [blastp]
Subcellular
localization
wolf
nucl 10  (predict for NP_001190106.1)
nucl 10  (predict for NP_001190107.1)
nucl 9  (predict for NP_001326861.1)
nucl 9  (predict for NP_001326862.1)
nucl 9  (predict for NP_001326863.1)
nucl 10  (predict for NP_001326864.1)
nucl 10  (predict for NP_191231.2)
Subcellular
localization
TargetP
other 8  (predict for NP_001190106.1)
other 8  (predict for NP_001190107.1)
other 8  (predict for NP_001326861.1)
other 8  (predict for NP_001326862.1)
other 8  (predict for NP_001326863.1)
other 8  (predict for NP_001326864.1)
other 8  (predict for NP_191231.2)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-u.5
for
AT3G56720
ath-r.7
for
AT3G56720
ath-m.9
for
AT3G56720
ath-e.2
for
AT3G56720
ath-m.4.bio
for
AT3G56720
ath-m.4.hor
for
AT3G56720
ath-m.4.lig
for
AT3G56720
ath-m.4.str
for
AT3G56720
ath-m.4.tis
for
AT3G56720
bra-r.6
for
103841571
bna-r.1
for
125591147
ghi-r.1
for
107891362
ghi-r.1
for
107889376
cit-r.1
for
102613974
gma-u.5
for
100806966
gma-u.5
for
100798812
vvi-u.5
for
100257160
ppo-u.5
for
7496082
ppo-u.5
for
7464095
mtr-u.5
for
11424300
sly-u.5
for
101247793
sot-r.1
for
102597853
nta-r.1
for
107796830
nta-r.1
for
107771131
osa-u.5
for
4348955
zma-u.5
for
100274181
zma-u.5
for
100274004
tae-r.2
for
123052341
tae-r.2
for
123085196
tae-r.2
for
123092801
hvu-r.1
for
123425626
hvu-r.1
for
123449180
sbi-r.1
for
8066195
bdi-r.1
for
100836225


Ortholog ID: 7627
Species ath bra bna ghi ghi cit gma gma vvi ppo ppo mtr sly sot nta nta osa zma zma tae tae tae hvu hvu sbi bdi
Symbol AT3G56720 LOC103841571 LOC125591147 LOC107891362 LOC107889376 LOC102613974 LOC100806966 LOC100798812 LOC100257160 LOC7496082 LOC7464095 LOC11424300 LOC101247793 LOC102597853 LOC107796830 LOC107771131 LOC4348955 LOC100274181 LOC100274004 LOC123052341 LOC123092801 LOC123044481 LOC123425626 LOC123449180 LOC8066195 LOC100836225
Function* pre-mRNA-splicing factor arginine/serine-rich coiled-coil protein 2 arginine/serine-rich coiled-coil protein 2-like arginine/serine-rich coiled-coil protein 2 arginine/serine-rich coiled-coil protein 2 uncharacterized LOC102613974 arginine/serine-rich coiled-coil protein 2 arginine/serine-rich coiled-coil protein 2 uncharacterized LOC100257160 uncharacterized LOC7496082 uncharacterized LOC7464095 arginine/serine-rich coiled-coil protein 2 uncharacterized LOC101247793 arginine/serine-rich coiled-coil protein 2 uncharacterized LOC107796830 uncharacterized LOC107771131 uncharacterized LOC4348955 uncharacterized LOC100274181 uncharacterized LOC100274004 uncharacterized protein DDB_G0286299 nuclear speckle splicing regulatory protein 1 uncharacterized LOC123044481 uncharacterized protein DDB_G0286299-like nuclear speckle splicing regulatory protein 1-like pre-mRNA-processing ATP-dependent RNA helicase prp5 dentin matrix acidic phosphoprotein 1
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03040 Spliceosome 2
bna04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03040 Spliceosome 4
ghi03015 mRNA surveillance pathway 2
ghi03250 Viral life cycle - HIV-1 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03040 Spliceosome 4
ghi03015 mRNA surveillance pathway 2
ghi03250 Viral life cycle - HIV-1 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00561 Glycerolipid metabolism 2
gma00564 Glycerophospholipid metabolism 2
gma03083 Polycomb repressive complex 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03040 Spliceosome 6
mtr03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03040 Spliceosome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03022 Basal transcription factors 2
sot03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 5
nta03022 Basal transcription factors 2
nta03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03082 ATP-dependent chromatin remodeling 3
zma03410 Base excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03040 Spliceosome 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03050 Proteasome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03040 Spliceosome 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi04120 Ubiquitin mediated proteolysis 2
bdi04141 Protein processing in endoplasmic reticulum 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 824839 103841571 125591147 107891362 107889376 102613974 100806966 100798812 100257160 7496082 7464095 11424300 101247793 102597853 107796830 107771131 4348955 100274181 100274004 123052341 123092801 123044481 123425626 123449180 8066195 100836225
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