ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
ath-u.5	TIR1	F-box/RNI-like superfamily protein
ath-r.7	TIR1	F-box/RNI-like superfamily protein
ath-m.9	TIR1	F-box/RNI-like superfamily protein
ath-e.2	TIR1	F-box/RNI-like superfamily protein
ath-m.4.bio	TIR1	F-box/RNI-like superfamily protein
ath-m.4.hor	TIR1	F-box/RNI-like superfamily protein
ath-m.4.lig	TIR1	F-box/RNI-like superfamily protein
ath-m.4.str	TIR1	F-box/RNI-like superfamily protein
ath-m.4.tis	TIR1	F-box/RNI-like superfamily protein
ath-u.5	GRH1	GRR1-like protein 1
bra-r.6	103830378	protein TRANSPORT INHIBITOR RESPONSE 1
bra-r.6	103842104	protein TRANSPORT INHIBITOR RESPONSE 1
bra-r.6	103846823	GRR1-like protein 1
bna-r.1	106375233	protein TRANSPORT INHIBITOR RESPONSE 1
bna-r.1	106390402	protein TRANSPORT INHIBITOR RESPONSE 1
bna-r.1	106392292	GRR1-like protein 1
ghi-r.1	107924496	protein TRANSPORT INHIBITOR RESPONSE 1
ghi-r.1	121220114	protein TRANSPORT INHIBITOR RESPONSE 1
ghi-r.1	107953203	protein TRANSPORT INHIBITOR RESPONSE 1
cit-r.1	102630854	protein TRANSPORT INHIBITOR RESPONSE 1
gma-u.5	TIR1D	protein TRANSPORT INHIBITOR RESPONSE 1D
gma-u.5	TIR1A	protein TRANSPORT INHIBITOR RESPONSE 1A
vvi-u.5	100233127	protein TRANSPORT INHIBITOR RESPONSE 1
vvi-u.5	100264085	protein TRANSPORT INHIBITOR RESPONSE 1
vvi-u.5	100252378	protein AUXIN SIGNALING F-BOX 2
ppo-u.5	18111294	protein TRANSPORT INHIBITOR RESPONSE 1
ppo-u.5	7491325	protein TRANSPORT INHIBITOR RESPONSE 1
mtr-u.5	25484780	protein TRANSPORT INHIBITOR RESPONSE 1
sly-u.5	100316892	TIR1-like protein
sot-r.1	107058008	protein TRANSPORT INHIBITOR RESPONSE 1-like
sot-r.1	102578728	protein TRANSPORT INHIBITOR RESPONSE 1-like
sot-r.1	102578999	protein TRANSPORT INHIBITOR RESPONSE 1
nta-r.1	107770213	protein TRANSPORT INHIBITOR RESPONSE 1
nta-r.1	107791833	protein TRANSPORT INHIBITOR RESPONSE 1
nta-r.1	107811573	protein TRANSPORT INHIBITOR RESPONSE 1
osa-u.5	4337827	transport inhibitor response 1-like protein Os05g0150500
zma-u.5	103635896	transport inhibitor response 1-like protein Os05g0150500
tae-r.2	123112721	transport inhibitor response 1-like protein Os05g0150500
tae-r.2	123180517	transport inhibitor response 1-like protein Os05g0150500
tae-r.2	123191327	transport inhibitor response 1-like protein Os05g0150500
hvu-r.1	123403296	transport inhibitor response 1-like protein Os11g0515500
hvu-r.1	123425454	transport inhibitor response 1-like protein Os05g0150500
sbi-r.1	8069501	transport inhibitor response 1-like protein Os05g0150500
bdi-r.1	100822026	transport inhibitor response 1-like protein Os05g0150500

Top 50 coexpressed genes to TIR1 (ath-u.5 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to TIR1 (ath-u.5 coexpression data)

CoexMap"825473"

[Cytoscape]

Annotation

functional annotation

KEGG

ath04075 [list] [network] Plant hormone signal transduction (433 genes)

GO BP

GO:0010152 [list] [network] pollen maturation	(19 genes)	IGI
GO:0010311 [list] [network] lateral root formation	(61 genes)	IMP
GO:0009734 [list] [network] auxin-activated signaling pathway	(65 genes)	IMP
GO:0048443 [list] [network] stamen development	(113 genes)	IGI
GO:0016036 [list] [network] cellular response to phosphate starvation	(116 genes)	IEP
GO:0006511 [list] [network] ubiquitin-dependent protein catabolic process	(219 genes)	TAS
GO:0009733 [list] [network] response to auxin	(344 genes)	IMP

GO CC

GO:0019005 [list] [network] SCF ubiquitin ligase complex	(41 genes)	IDA
GO:0000151 [list] [network] ubiquitin ligase complex	(192 genes)	IDA
GO:0005737 [list] [network] cytoplasm	(14000 genes)	ISM

GO MF

GO:0038198 [list] [network] auxin receptor activity	(6 genes)	IDA
GO:0000822 [list] [network] inositol hexakisphosphate binding	(7 genes)	IDA
GO:0010011 [list] [network] auxin binding	(10 genes)	IDA IGI
GO:0004842 [list] [network] ubiquitin-protein transferase activity	(268 genes)	IC
GO:0005515 [list] [network] protein binding	(5363 genes)	IPI

Protein

NP_567135.1 [sequence] [blastp]

Subcellular
localization
wolf

chlo 4, nucl 4, plas 1, extr 1

(predict for NP_567135.1)

Subcellular
localization
TargetP

other 7

(predict for NP_567135.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target				Condition-specific^*					Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	ath-u.5 for TIR1	ath-r.7 for TIR1	ath-m.9 for TIR1	ath-e.2 for TIR1	ath-m.4.bio for TIR1	ath-m.4.hor for TIR1	ath-m.4.lig for TIR1	ath-m.4.str for TIR1	ath-m.4.tis for TIR1	ath-u.5 for GRH1	bra-r.6 for 103830378	bra-r.6 for 103842104	bra-r.6 for 103846823	bna-r.1 for 106375233	bna-r.1 for 106390402	bna-r.1 for 106392292	ghi-r.1 for 107924496	ghi-r.1 for 121220114	ghi-r.1 for 107953203	cit-r.1 for 102630854	gma-u.5 for TIR1D	gma-u.5 for TIR1A	vvi-u.5 for 100233127	vvi-u.5 for 100264085	vvi-u.5 for 100252378	ppo-u.5 for 18111294	ppo-u.5 for 7491325	mtr-u.5 for 25484780	sly-u.5 for 100316892	sot-r.1 for 107058008	sot-r.1 for 102578728	sot-r.1 for 102578999	nta-r.1 for 107770213	nta-r.1 for 107791833	nta-r.1 for 107811573	osa-u.5 for 4337827	zma-u.5 for 103635896	tae-r.2 for 123112721	tae-r.2 for 123180517	tae-r.2 for 123191327	hvu-r.1 for 123403296	hvu-r.1 for 123425454	sbi-r.1 for 8069501	bdi-r.1 for 100822026

Ortholog

Ortholog ID: 2659

Species

ath

bra

bna

ghi

cit

gma

vvi

ppo

mtr

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

Symbol

TIR1

GRH1

TIR1A

TIR1B

TIR1C

Function^*

F-box/RNI-like superfamily protein

GRR1-like protein 1