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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-u.5   HCD1   3-hydroxyacyl-CoA dehydratase 1 
 ath-r.7   HCD1   3-hydroxyacyl-CoA dehydratase 1 
 ath-m.9   HCD1   3-hydroxyacyl-CoA dehydratase 1 
 ath-e.2   HCD1   3-hydroxyacyl-CoA dehydratase 1 
 ath-m.4.bio   HCD1   3-hydroxyacyl-CoA dehydratase 1 
 ath-m.4.hor   HCD1   3-hydroxyacyl-CoA dehydratase 1 
 ath-m.4.lig   HCD1   3-hydroxyacyl-CoA dehydratase 1 
 ath-m.4.str   HCD1   3-hydroxyacyl-CoA dehydratase 1 
 ath-m.4.tis   HCD1   3-hydroxyacyl-CoA dehydratase 1 
 ath-u.5   IBR10   indole-3-butyric acid response 10 
 ath-u.5   ECI1   delta(3), delta(2)-enoyl CoA isomerase 1 
 gma-u.5   100786464   enoyl-CoA delta isomerase 1, peroxisomal 
 gma-u.5   100797754   enoyl-CoA delta isomerase 2, peroxisomal 
 gma-u.5   100819162   enoyl-CoA delta isomerase 2, peroxisomal 
 vvi-u.5   100246098   enoyl-CoA delta isomerase 1, peroxisomal 
 vvi-u.5   100266490   enoyl-CoA delta isomerase 2, peroxisomal 
 vvi-u.5   100261285   enoyl-CoA delta isomerase 2, peroxisomal 
 ppo-u.5   7489583   enoyl-CoA delta isomerase 1, peroxisomal 
 ppo-u.5   7492421   enoyl-CoA delta isomerase 2, peroxisomal 
 ppo-u.5   18101590   enoyl-CoA delta isomerase 2, peroxisomal 
 mtr-u.5   11446098   enoyl-CoA delta isomerase 1, peroxisomal 
 mtr-u.5   11423941   enoyl-CoA delta isomerase 2, peroxisomal 
 mtr-u.5   11438311   enoyl-CoA delta isomerase 1, peroxisomal 
 sly-u.5   101256710   enoyl-CoA delta isomerase 1, peroxisomal 
 sly-u.5   101250512   enoyl-CoA delta isomerase 2, peroxisomal 
 sly-u.5   101257169   enoyl-CoA delta isomerase 1, peroxisomal-like 
 osa-u.5   4339402   enoyl-CoA delta isomerase 3 
 osa-u.5   4327088   enoyl-CoA delta isomerase 2, peroxisomal 
 zma-u.5   100284027   carnitine racemase/ catalytic 
 zma-u.5   100285527   carnitine racemase like protein 
 zma-u.5   118476621   enoyl-CoA delta isomerase 2, peroxisomal-like 

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Top 50 coexpressed genes to HCD1 (ath-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to HCD1 (ath-u.5 coexpression data)

CoexMap"827089"


athHCD1 | Entrez gene ID : 827089      
Species ath gma vvi ppo mtr sly osa zma tae hvu ghi bdi cit bra cre sbi bna nta sot
Paralog 11 3 3 3 3 3 2 3 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG ath00071 [list] [network] Fatty acid degradation (47 genes)
ath04626 [list] [network] Plant-pathogen interaction (216 genes)
GO BP
GO:0009062 [list] [network] fatty acid catabolic process  (30 genes)  IMP  
GO CC
GO:0005777 [list] [network] peroxisome  (313 genes)  IDA  
GO:0005829 [list] [network] cytosol  (2593 genes)  IDA  
GO:0005634 [list] [network] nucleus  (10367 genes)  IDA  
GO:0005737 [list] [network] cytoplasm  (14000 genes)  ISM  
GO MF
GO:0008809 [list] [network] carnitine racemase activity  (2 genes)  ISS  
GO:0004165 [list] [network] delta(3)-delta(2)-enoyl-CoA isomerase activity  (3 genes)  IDA IGI  
Protein NP_193180.1 [sequence] [blastp]
Subcellular
localization
wolf
cyto 4,  chlo 4,  plas 1,  nucl_plas 1  (predict for NP_193180.1)
Subcellular
localization
TargetP
other 8  (predict for NP_193180.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-u.5
for
HCD1

.
ath-r.7
for
HCD1

.
ath-m.9
for
HCD1

.
ath-e.2
for
HCD1

.
ath-m.4.bio
for
HCD1

.
ath-m.4.hor
for
HCD1

.
ath-m.4.lig
for
HCD1

.
ath-m.4.str
for
HCD1

.
ath-m.4.tis
for
HCD1

.
ath-u.5
for
IBR10

.
ath-u.5
for
ECI1

.
gma-u.5
for
100786464

.
gma-u.5
for
100797754

.
gma-u.5
for
100819162

.
vvi-u.5
for
100246098

.
vvi-u.5
for
100266490

.
vvi-u.5
for
100261285

.
ppo-u.5
for
7489583

.
ppo-u.5
for
7492421

.
ppo-u.5
for
18101590

.
mtr-u.5
for
11446098

.
mtr-u.5
for
11423941

.
mtr-u.5
for
11438311

.
sly-u.5
for
101256710

.
sly-u.5
for
101250512

.
sly-u.5
for
101257169

.
osa-u.5
for
4339402

.
osa-u.5
for
4327088

.
zma-u.5
for
100284027

.
zma-u.5
for
100285527

.
zma-u.5
for
118476621

.


Ortholog ID: 1429
Species ath ath gma gma sly sly osa osa zma zma bra bra vvi ppo ppo mtr mtr tae tae hvu hvu ghi ghi bna bna sbi sbi sot sot cit cit bdi bdi nta nta
Symbol ECI1 IBR10 LOC100786464 LOC100797754 LOC101256710 LOC101256875 LOC4327088 LOC4339402 LOC118476621 LOC100285527 LOC103837234 LOC103833439 LOC100246098 LOC7489583 LOC7492421 LOC11446098 LOC11423941 LOC123065105 LOC123065108 LOC123443086 LOC123418081 LOC107940446 LOC107933041 LOC106402570 LOC106365726 LOC8084317 LOC8068966 LOC102584122 LOC102592584 LOC102612501 LOC102628379 LOC100844862 LOC100842438 LOC107773754 LOC107804544
Function* delta(3), delta(2)-enoyl CoA isomerase 1 indole-3-butyric acid response 10 enoyl-CoA delta isomerase 1, peroxisomal enoyl-CoA delta isomerase 2, peroxisomal enoyl-CoA delta isomerase 1, peroxisomal enoyl-CoA delta isomerase 1, peroxisomal-like enoyl-CoA delta isomerase 2, peroxisomal enoyl-CoA delta isomerase 3 enoyl-CoA delta isomerase 2, peroxisomal-like carnitine racemase like protein enoyl-CoA delta isomerase 1, peroxisomal enoyl-CoA delta isomerase 2, peroxisomal enoyl-CoA delta isomerase 1, peroxisomal enoyl-CoA delta isomerase 1, peroxisomal enoyl-CoA delta isomerase 2, peroxisomal enoyl-CoA delta isomerase 1, peroxisomal enoyl-CoA delta isomerase 2, peroxisomal enoyl-CoA delta isomerase 2, peroxisomal enoyl-CoA delta isomerase 2, peroxisomal enoyl-CoA delta isomerase 2, peroxisomal-like enoyl-CoA delta isomerase 3-like enoyl-CoA delta isomerase 2, peroxisomal enoyl-CoA delta isomerase 2, peroxisomal enoyl-CoA delta isomerase 1, peroxisomal enoyl-CoA delta isomerase 3 enoyl-CoA delta isomerase 2, peroxisomal enoyl-CoA delta isomerase 2, peroxisomal enoyl-CoA delta isomerase 1, peroxisomal-like enoyl-CoA delta isomerase 2, peroxisomal-like enoyl-CoA delta isomerase 1, peroxisomal-like enoyl-CoA delta isomerase 2, peroxisomal-like enoyl-CoA delta isomerase 2, peroxisomal enoyl-CoA delta isomerase 2, peroxisomal enoyl-CoA delta isomerase 2, peroxisomal-like enoyl-CoA delta isomerase 2, peroxisomal
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00190 Oxidative phosphorylation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04130 SNARE interactions in vesicular transport 2
ath00280 Valine, leucine and isoleucine degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03060 Protein export 3
gma04141 Protein processing in endoplasmic reticulum 3
gma03083 Polycomb repressive complex 2
gma00400 Phenylalanine, tyrosine and tryptophan biosynthesis 2
gma01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly01200 Carbon metabolism 3
sly00010 Glycolysis / Gluconeogenesis 2
sly00030 Pentose phosphate pathway 2
sly00051 Fructose and mannose metabolism 2
sly00710 Carbon fixation by Calvin cycle 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03050 Proteasome 4
sly00071 Fatty acid degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00071 Fatty acid degradation 3
osa01200 Carbon metabolism 3
osa00280 Valine, leucine and isoleucine degradation 2
osa00592 alpha-Linolenic acid metabolism 2
osa01212 Fatty acid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00190 Oxidative phosphorylation 2
ppo00071 Fatty acid degradation 2
ppo01212 Fatty acid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04141 Protein processing in endoplasmic reticulum 3
ppo04146 Peroxisome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00943 Isoflavonoid biosynthesis 7
mtr00941 Flavonoid biosynthesis 4
mtr00071 Fatty acid degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00071 Fatty acid degradation 4
tae04120 Ubiquitin mediated proteolysis 2
tae00010 Glycolysis / Gluconeogenesis 2
tae00030 Pentose phosphate pathway 2
tae00051 Fructose and mannose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00071 Fatty acid degradation 4
tae04146 Peroxisome 2
tae04120 Ubiquitin mediated proteolysis 2
tae00010 Glycolysis / Gluconeogenesis 2
tae00030 Pentose phosphate pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00071 Fatty acid degradation 4
ghi00061 Fatty acid biosynthesis 2
ghi00780 Biotin metabolism 2
ghi01212 Fatty acid metabolism 2
ghi01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00071 Fatty acid degradation 4
ghi00061 Fatty acid biosynthesis 2
ghi00780 Biotin metabolism 2
ghi01212 Fatty acid metabolism 2
ghi01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00071 Fatty acid degradation 4
bna00511 Other glycan degradation 2
bna04142 Lysosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04626 Plant-pathogen interaction 7
bna00062 Fatty acid elongation 5
bna00071 Fatty acid degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00195 Photosynthesis 9
sot00196 Photosynthesis - antenna proteins 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00940 Phenylpropanoid biosynthesis 4
cit01230 Biosynthesis of amino acids 3
cit00270 Cysteine and methionine metabolism 2
cit00071 Fatty acid degradation 2
cit00941 Flavonoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00071 Fatty acid degradation 3
cit03410 Base excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00071 Fatty acid degradation 2
nta03040 Spliceosome 2
nta03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00071 Fatty acid degradation 2
nta04122 Sulfur relay system 2
nta03040 Spliceosome 2
nta03008 Ribosome biogenesis in eukaryotes 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 842864 827088 100786464 100797754 101256710 101256875 4327088 4339402 118476621 100285527 103837234 103833439 100246098 7489583 7492421 11446098 11423941 123065105 123065108 123443086 123418081 107940446 107933041 106402570 106365726 8084317 8068966 102584122 102592584 102612501 102628379 100844862 100842438 107773754 107804544
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