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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-u.5   LIF2   RNA-binding (RRM/RBD/RNP motifs) family protein 
 ath-r.7   LIF2   RNA-binding (RRM/RBD/RNP motifs) family protein 
 ath-m.9   LIF2   RNA-binding (RRM/RBD/RNP motifs) family protein 
 ath-e.2   LIF2   RNA-binding (RRM/RBD/RNP motifs) family protein 
 ath-m.4.bio   LIF2   RNA-binding (RRM/RBD/RNP motifs) family protein 
 ath-m.4.hor   LIF2   RNA-binding (RRM/RBD/RNP motifs) family protein 
 ath-m.4.lig   LIF2   RNA-binding (RRM/RBD/RNP motifs) family protein 
 ath-m.4.str   LIF2   RNA-binding (RRM/RBD/RNP motifs) family protein 
 ath-m.4.tis   LIF2   RNA-binding (RRM/RBD/RNP motifs) family protein 
 ath-u.5   AT3G52660   RNA-binding (RRM/RBD/RNP motifs) family protein 
 ath-u.5   AT5G28390   RNA-binding (RRM/RBD/RNP motifs) family protein 
 gma-u.5   100806658   heterogeneous nuclear ribonucleoprotein Q 
 gma-u.5   100800974   heterogeneous nuclear ribonucleoprotein Q 
 gma-u.5   100798476   heterogeneous nuclear ribonucleoprotein Q 
 vvi-u.5   100259599   heterogeneous nuclear ribonucleoprotein Q 
 vvi-u.5   100241942   heterogeneous nuclear ribonucleoprotein Q 
 vvi-u.5   100267377   heterogeneous nuclear ribonucleoprotein Q 
 ppo-u.5   7455357   heterogeneous nuclear ribonucleoprotein Q 
 ppo-u.5   7492252   heterogeneous nuclear ribonucleoprotein Q 
 ppo-u.5   18098111   heterogeneous nuclear ribonucleoprotein Q 
 mtr-u.5   25492284   heterogeneous nuclear ribonucleoprotein Q 
 mtr-u.5   11423198   heterogeneous nuclear ribonucleoprotein Q 
 mtr-u.5   11410526   heterogeneous nuclear ribonucleoprotein Q 
 sly-u.5   101253016   heterogeneous nuclear ribonucleoprotein Q 
 sly-u.5   101268517   heterogeneous nuclear ribonucleoprotein Q 
 osa-u.5   4350209   heterogeneous nuclear ribonucleoprotein Q 
 osa-u.5   4351445   heterogeneous nuclear ribonucleoprotein Q 
 osa-u.5   4349728   heterogeneous nuclear ribonucleoprotein Q 
 zma-u.5   103647119   heterogeneous nuclear ribonucleoprotein Q 
 zma-u.5   100279765   uncharacterized LOC100279765 
 zma-u.5   103640663   heterogeneous nuclear ribonucleoprotein Q 

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Top 50 coexpressed genes to LIF2 (ath-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to LIF2 (ath-u.5 coexpression data)

CoexMap"827998"


athLIF2 | Entrez gene ID : 827998      
Species ath gma vvi ppo mtr sly osa zma tae hvu ghi bdi cit bra cre sbi bna nta sot
Paralog 11 3 3 3 3 2 3 3 0 0 0 0 0 0 0 0 0 0 0
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:1905933 [list] [network] regulation of cell fate determination  (1 genes)  IMP  
GO:0010439 [list] [network] regulation of glucosinolate biosynthetic process  (13 genes)  IMP  
GO:0045824 [list] [network] negative regulation of innate immune response  (24 genes)  IMP  
GO:0071395 [list] [network] cellular response to jasmonic acid stimulus  (78 genes)  IDA  
GO:0045087 [list] [network] innate immune response  (157 genes)  IMP  
GO:0009909 [list] [network] regulation of flower development  (163 genes)  IMP  
GO:0040029 [list] [network] epigenetic regulation of gene expression  (174 genes)  IMP  
GO:0045893 [list] [network] positive regulation of DNA-templated transcription  (262 genes)  IDA  
GO:0050832 [list] [network] defense response to fungus  (282 genes)  IMP  
GO:0042742 [list] [network] defense response to bacterium  (363 genes)  IMP  
GO:0009617 [list] [network] response to bacterium  (500 genes)  IEP  
GO:0010468 [list] [network] regulation of gene expression  (2062 genes)  IMP  
GO CC
GO:0005634 [list] [network] nucleus  (10367 genes)  IDA ISM  
GO:0005737 [list] [network] cytoplasm  (14000 genes)  IDA  
GO MF
GO:0003682 [list] [network] chromatin binding  (103 genes)  IDA  
GO:0043565 [list] [network] sequence-specific DNA binding  (875 genes)  IDA  
GO:0003729 [list] [network] mRNA binding  (1514 genes)  HDA IDA  
GO:0005515 [list] [network] protein binding  (5363 genes)  IPI  
Protein NP_001031566.1 [sequence] [blastp]
NP_001190647.2 [sequence] [blastp]
NP_001190648.1 [sequence] [blastp]
NP_001328329.1 [sequence] [blastp]
NP_001328330.1 [sequence] [blastp]
NP_567192.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 9  (predict for NP_001031566.1)
nucl 10  (predict for NP_001190647.2)
nucl 9  (predict for NP_001190648.1)
nucl 10  (predict for NP_001328329.1)
nucl 9  (predict for NP_001328330.1)
nucl 9  (predict for NP_567192.1)
Subcellular
localization
TargetP
other 9  (predict for NP_001031566.1)
other 9  (predict for NP_001190647.2)
other 9  (predict for NP_001190648.1)
other 9  (predict for NP_001328329.1)
other 9  (predict for NP_001328330.1)
other 9  (predict for NP_567192.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-u.5
for
LIF2

.
ath-r.7
for
LIF2

.
ath-m.9
for
LIF2

.
ath-e.2
for
LIF2

.
ath-m.4.bio
for
LIF2

.
ath-m.4.hor
for
LIF2

.
ath-m.4.lig
for
LIF2

.
ath-m.4.str
for
LIF2

.
ath-m.4.tis
for
LIF2

.
ath-u.5
for
AT3G52660

.
ath-u.5
for
AT5G28390

.
gma-u.5
for
100806658

.
gma-u.5
for
100800974

.
gma-u.5
for
100798476

.
vvi-u.5
for
100259599

.
vvi-u.5
for
100241942

.
vvi-u.5
for
100267377

.
ppo-u.5
for
7455357

.
ppo-u.5
for
7492252

.
ppo-u.5
for
18098111

.
mtr-u.5
for
25492284

.
mtr-u.5
for
11423198

.
mtr-u.5
for
11410526

.
sly-u.5
for
101253016

.
sly-u.5
for
101268517

.
osa-u.5
for
4350209

.
osa-u.5
for
4351445

.
osa-u.5
for
4349728

.
zma-u.5
for
103647119

.
zma-u.5
for
100279765

.
zma-u.5
for
103640663

.


Ortholog ID: 1709
Species ath ath gma gma sly sly osa osa zma zma bra bra vvi vvi ppo ppo mtr mtr tae tae hvu hvu ghi ghi bna bna cre sbi sbi sot sot cit cit bdi bdi nta nta
Symbol LIF2 AT3G52660 LOC100806658 LOC100798476 LOC101268517 LOC101253016 LOC4350209 LOC4349728 LOC103640663 LOC103647119 LOC103858818 LOC103841195 LOC100259599 LOC100241942 LOC18096389 LOC7467576 LOC25492284 LOC11433563 LOC123096596 LOC123086374 LOC123406958 LOC123448184 LOC107959351 LOC107932507 LOC106426664 LOC106376629 CHLRE_03g169150v5 LOC8066096 LOC8085622 LOC102604470 LOC102601207 LOC102619919 LOC102619718 LOC100838709 LOC100834952 LOC107812698 LOC107773309
Function* RNA-binding (RRM/RBD/RNP motifs) family protein RNA-binding (RRM/RBD/RNP motifs) family protein heterogeneous nuclear ribonucleoprotein Q heterogeneous nuclear ribonucleoprotein Q heterogeneous nuclear ribonucleoprotein Q heterogeneous nuclear ribonucleoprotein Q heterogeneous nuclear ribonucleoprotein Q heterogeneous nuclear ribonucleoprotein Q heterogeneous nuclear ribonucleoprotein Q heterogeneous nuclear ribonucleoprotein Q heterogeneous nuclear ribonucleoprotein Q heterogeneous nuclear ribonucleoprotein Q heterogeneous nuclear ribonucleoprotein Q heterogeneous nuclear ribonucleoprotein Q heterogeneous nuclear ribonucleoprotein Q heterogeneous nuclear ribonucleoprotein Q heterogeneous nuclear ribonucleoprotein Q heterogeneous nuclear ribonucleoprotein Q heterogeneous nuclear ribonucleoprotein Q heterogeneous nuclear ribonucleoprotein Q heterogeneous nuclear ribonucleoprotein Q heterogeneous nuclear ribonucleoprotein Q-like heterogeneous nuclear ribonucleoprotein Q heterogeneous nuclear ribonucleoprotein Q heterogeneous nuclear ribonucleoprotein Q-like heterogeneous nuclear ribonucleoprotein Q-like uncharacterized protein heterogeneous nuclear ribonucleoprotein R heterogeneous nuclear ribonucleoprotein R heterogeneous nuclear ribonucleoprotein Q heterogeneous nuclear ribonucleoprotein R heterogeneous nuclear ribonucleoprotein Q-like heterogeneous nuclear ribonucleoprotein Q heterogeneous nuclear ribonucleoprotein Q heterogeneous nuclear ribonucleoprotein Q heterogeneous nuclear ribonucleoprotein Q heterogeneous nuclear ribonucleoprotein Q
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 4
ath03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 7
gma03008 Ribosome biogenesis in eukaryotes 2
gma03083 Polycomb repressive complex 2
gma04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 5
gma03013 Nucleocytoplasmic transport 2
gma03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03050 Proteasome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03040 Spliceosome 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03083 Polycomb repressive complex 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03040 Spliceosome 4
zma03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03040 Spliceosome 3
bra03008 Ribosome biogenesis in eukaryotes 3
bra03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04712 Circadian rhythm - plant 2
vvi00561 Glycerolipid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00970 Aminoacyl-tRNA biosynthesis 4
tae04075 Plant hormone signal transduction 2
tae04136 Autophagy - other 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00970 Aminoacyl-tRNA biosynthesis 4
tae04075 Plant hormone signal transduction 3
tae04136 Autophagy - other 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03040 Spliceosome 4
hvu04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03015 mRNA surveillance pathway 3
bna03018 RNA degradation 2
bna03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03040 Spliceosome 5
cre04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03050 Proteasome 4
sbi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03040 Spliceosome 3
sbi03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03420 Nucleotide excision repair 2
sot04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03010 Ribosome 4
bdi03050 Proteasome 2
bdi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03040 Spliceosome 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 6
nta03013 Nucleocytoplasmic transport 2
nta03015 mRNA surveillance pathway 2
nta03083 Polycomb repressive complex 2
nta03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 4
nta03082 ATP-dependent chromatin remodeling 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 827998 824432 100806658 100798476 101268517 101253016 4350209 4349728 103640663 103647119 103858818 103841195 100259599 100241942 18096389 7467576 25492284 11433563 123096596 123086374 123406958 123448184 107959351 107932507 106426664 106376629 66052824 8066096 8085622 102604470 102601207 102619919 102619718 100838709 100834952 107812698 107773309
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