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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-u.5   FRI   FRIGIDA-like protein 
 ath-r.7   FRI   FRIGIDA-like protein 
 ath-m.9   FRI   FRIGIDA-like protein 
 ath-e.2   FRI   FRIGIDA-like protein 
 ath-m.4.bio   FRI   FRIGIDA-like protein 
 ath-m.4.hor   FRI   FRIGIDA-like protein 
 ath-m.4.lig   FRI   FRIGIDA-like protein 
 ath-m.4.str   FRI   FRIGIDA-like protein 
 ath-m.4.tis   FRI   FRIGIDA-like protein 
 bra-r.6   103249151   protein FRIGIDA 
 bra-r.6   103864864   protein FRIGIDA 
 bna-r.1   106387913   protein FRIGIDA-like 
 bna-r.1   106406773   protein FRIGIDA 
 bna-r.1   106375657   protein FRIGIDA 
 ghi-r.1   107937995   protein FRIGIDA 
 ghi-r.1   107949617   protein FRIGIDA 
 ghi-r.1   107953600   uncharacterized LOC107953600 
 cit-r.1   102613687   protein FRIGIDA 
 gma-u.5   100784969   protein FRIGIDA 
 gma-u.5   100801324   protein FRIGIDA 
 vvi-u.5   100258973   protein FRIGIDA 
 ppo-u.5   7456672   protein FRIGIDA 
 mtr-u.5   11429689   protein FRIGIDA 
 sly-u.5   101258064   protein FRIGIDA-like 
 sly-u.5   101248961   FRIGIDA-like protein 2 
 sly-u.5   101248468   protein FRIGIDA 
 sot-r.1   102602096   protein FRIGIDA-like 
 sot-r.1   102601815   uncharacterized LOC102601815 
 sot-r.1   102597366   protein FRIGIDA-like 
 nta-r.1   107827729   protein FRIGIDA-like 
 nta-r.1   107770328   uncharacterized LOC107770328 
 nta-r.1   107774410   protein FRIGIDA 
 osa-u.5   9269595   inactive protein FRIGIDA 
 tae-r.2   123123861   protein FRIGIDA 
 tae-r.2   123114361   uncharacterized LOC123114361 
 tae-r.2   123087564   translation initiation factor IF-2 
 hvu-r.1   123395150   protein FRIGIDA 
 hvu-r.1   123401707   nascent polypeptide-associated complex subunit alpha, muscle-specific form-like 

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Top 50 coexpressed genes to FRI (ath-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to FRI (ath-u.5 coexpression data)

CoexMap"828044"


athFRI | Entrez gene ID : 828044      
Species ath bra bna ghi cit gma vvi ppo mtr sly sot nta osa tae hvu zma bdi sbi cre
Paralog 9 2 3 3 1 2 1 1 1 3 3 3 1 3 2 0 0 0 0
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0010321 [list] [network] regulation of vegetative phase change  (7 genes)  IMP  
GO:0010048 [list] [network] vernalization response  (18 genes)  IGI  
GO:0048510 [list] [network] regulation of timing of transition from vegetative to reproductive phase  (43 genes)  IMP  
GO:0009910 [list] [network] negative regulation of flower development  (50 genes)  IMP  
GO:0010228 [list] [network] vegetative to reproductive phase transition of meristem  (186 genes)  IMP  
GO CC
GO:0009507 [list] [network] chloroplast  (5014 genes)  ISM  
GO:0005634 [list] [network] nucleus  (10367 genes)  IDA  
GO MF
GO:0046982 [list] [network] protein heterodimerization activity  (86 genes)  IPI  
GO:0042803 [list] [network] protein homodimerization activity  (237 genes)  IPI  
GO:0005515 [list] [network] protein binding  (5363 genes)  IPI  
Protein NP_567181.2 [sequence] [blastp]
Subcellular
localization
wolf
chlo 8,  nucl 1,  mito 1,  extr 1  (predict for NP_567181.2)
Subcellular
localization
TargetP
chlo 4  (predict for NP_567181.2)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-u.5
for
FRI
ath-r.7
for
FRI
ath-m.9
for
FRI
ath-e.2
for
FRI
ath-m.4.bio
for
FRI
ath-m.4.hor
for
FRI
ath-m.4.lig
for
FRI
ath-m.4.str
for
FRI
ath-m.4.tis
for
FRI
bra-r.6
for
103249151
bra-r.6
for
103864864
bna-r.1
for
106387913
bna-r.1
for
106406773
bna-r.1
for
106375657
ghi-r.1
for
107937995
ghi-r.1
for
107949617
ghi-r.1
for
107953600
cit-r.1
for
102613687
gma-u.5
for
100784969
gma-u.5
for
100801324
vvi-u.5
for
100258973
ppo-u.5
for
7456672
mtr-u.5
for
11429689
sly-u.5
for
101258064
sly-u.5
for
101248961
sly-u.5
for
101248468
sot-r.1
for
102602096
sot-r.1
for
102601815
sot-r.1
for
102597366
nta-r.1
for
107827729
nta-r.1
for
107770328
nta-r.1
for
107774410
osa-u.5
for
9269595
tae-r.2
for
123123861
tae-r.2
for
123114361
tae-r.2
for
123087564
hvu-r.1
for
123395150
hvu-r.1
for
123401707


Ortholog ID: 3716
Species ath bra bra bna bna bna ghi ghi ghi cit gma gma vvi ppo mtr sly sly sly sot sot sot nta nta nta osa tae tae tae hvu hvu
Symbol FRI LOC103249151 LOC103864864 LOC106387913 LOC106406773 LOC106387536 LOC107949617 LOC107953600 LOC107886184 LOC102613687 LOC100784969 LOC100801324 LOC100258973 LOC7456672 LOC11429689 LOC101258064 LOC101248961 LOC101248468 LOC102602096 LOC102601815 LOC102589537 LOC107827729 LOC107822683 LOC107827728 LOC9269595 LOC123123861 LOC123114361 LOC123087564 LOC123395150 LOC123401707
Function* FRIGIDA-like protein protein FRIGIDA protein FRIGIDA protein FRIGIDA-like protein FRIGIDA protein FRIGIDA protein FRIGIDA uncharacterized LOC107953600 protein FRIGIDA protein FRIGIDA protein FRIGIDA protein FRIGIDA protein FRIGIDA protein FRIGIDA protein FRIGIDA protein FRIGIDA-like FRIGIDA-like protein 2 protein FRIGIDA protein FRIGIDA-like uncharacterized LOC102601815 protein FRIGIDA-like protein FRIGIDA-like protein FRIGIDA-like uncharacterized LOC107827728 inactive protein FRIGIDA protein FRIGIDA uncharacterized LOC123114361 translation initiation factor IF-2 protein FRIGIDA nascent polypeptide-associated complex subunit alpha, muscle-specific form-like
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04120 Ubiquitin mediated proteolysis 3
bra04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00410 beta-Alanine metabolism 3
bra00071 Fatty acid degradation 2
bra00770 Pantothenate and CoA biosynthesis 2
bra01240 Biosynthesis of cofactors 2
bra04136 Autophagy - other 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04016 MAPK signaling pathway - plant 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00564 Glycerophospholipid metabolism 2
bna00565 Ether lipid metabolism 2
bna04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04016 MAPK signaling pathway - plant 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00310 Lysine degradation 2
ghi03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00330 Arginine and proline metabolism 2
ghi00410 beta-Alanine metabolism 2
ghi00770 Pantothenate and CoA biosynthesis 2
ghi04016 MAPK signaling pathway - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00310 Lysine degradation 2
ghi03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03040 Spliceosome 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04075 Plant hormone signal transduction 2
sot00400 Phenylalanine, tyrosine and tryptophan biosynthesis 2
sot01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04075 Plant hormone signal transduction 4
nta04016 MAPK signaling pathway - plant 2
nta03022 Basal transcription factors 2
nta04517 IgSF CAM signaling 2
nta04814 Motor proteins 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04141 Protein processing in endoplasmic reticulum 5
nta03010 Ribosome 2
nta00400 Phenylalanine, tyrosine and tryptophan biosynthesis 2
nta01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04141 Protein processing in endoplasmic reticulum 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03010 Ribosome 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00410 beta-Alanine metabolism 2
tae00770 Pantothenate and CoA biosynthesis 2
tae01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03020 RNA polymerase 3
tae03420 Nucleotide excision repair 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00520 Amino sugar and nucleotide sugar metabolism 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 828044 103249151 103864864 106387913 106406773 106387536 107949617 107953600 107886184 102613687 100784969 100801324 100258973 7456672 11429689 101258064 101248961 101248468 102602096 102601815 102589537 107827729 107822683 107827728 9269595 123123861 123114361 123087564 123395150 123401707
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