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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-u.5   IM   Alternative oxidase family protein 
 ath-r.7   IM   Alternative oxidase family protein 
 ath-m.9   IM   Alternative oxidase family protein 
 ath-e.2   IM   Alternative oxidase family protein 
 ath-m.4.bio   IM   Alternative oxidase family protein 
 ath-m.4.hor   IM   Alternative oxidase family protein 
 ath-m.4.lig   IM   Alternative oxidase family protein 
 ath-m.4.str   IM   Alternative oxidase family protein 
 ath-m.4.tis   IM   Alternative oxidase family protein 
 bra-r.6   103859909   ubiquinol oxidase 4, chloroplastic/chromoplastic 
 bna-r.1   106376504   ubiquinol oxidase 4, chloroplastic/chromoplastic-like 
 bna-r.1   106437635   ubiquinol oxidase 4, chloroplastic/chromoplastic 
 ghi-r.1   107905673   ubiquinol oxidase 4, chloroplastic/chromoplastic 
 ghi-r.1   107905897   ubiquinol oxidase 4, chloroplastic/chromoplastic 
 cit-r.1   102578048   ubiquinol oxidase 4, chloroplastic/chromoplastic 
 gma-u.5   PTOX   plastid terminal oxidase 
 gma-u.5   100807967   ubiquinol oxidase 4, chloroplastic/chromoplastic 
 vvi-u.5   100258527   ubiquinol oxidase 4, chloroplastic/chromoplastic 
 ppo-u.5   18097290   ubiquinol oxidase 4, chloroplastic/chromoplastic 
 ppo-u.5   7485412   ubiquinol oxidase 4, chloroplastic/chromoplastic 
 mtr-u.5   11446887   ubiquinol oxidase 4, chloroplastic/chromoplastic 
 sly-u.5   PTOX   plastid quinol oxidase 
 sot-r.1   102605095   ubiquinol oxidase 4, chloroplastic/chromoplastic 
 nta-r.1   107827194   ubiquinol oxidase 4, chloroplastic/chromoplastic-like 
 nta-r.1   107773225   ubiquinol oxidase 4, chloroplastic/chromoplastic 
 osa-u.5   4337339   ubiquinol oxidase 4, chloroplastic/chromoplastic 
 osa-u.5   9266028   ubiquinol oxidase 4, chloroplastic/chromoplastic 
 zma-u.5   100284413   uncharacterized LOC100284413 
 zma-u.5   100273671   alternative oxidase 
 tae-r.2   123047283   ubiquinol oxidase 4, chloroplastic/chromoplastic 
 tae-r.2   123055085   ubiquinol oxidase 4, chloroplastic/chromoplastic 
 tae-r.2   123190937   ubiquinol oxidase 4, chloroplastic/chromoplastic 
 hvu-r.1   123428440   ubiquinol oxidase 4, chloroplastic/chromoplastic 
 sbi-r.1   8070294   ubiquinol oxidase 4, chloroplastic/chromoplastic 
 sbi-r.1   110436369   ubiquinol oxidase 4, chloroplastic/chromoplastic-like 
 bdi-r.1   100836303   ubiquinol oxidase 4, chloroplastic/chromoplastic 
 cre-r.1   CHLRE_03g172500v5   uncharacterized protein 
 cre-r.1   CHLRE_07g350750v5   uncharacterized protein 

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Top 50 coexpressed genes to IM (ath-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to IM (ath-u.5 coexpression data)

CoexMap"828321"


athIM | Entrez gene ID : 828321      
Species ath bra bna ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 9 1 2 2 1 2 1 2 1 1 1 2 2 2 3 1 2 1 2
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0016117 [list] [network] carotenoid biosynthetic process  (21 genes)  IMP  
GO:0009644 [list] [network] response to high light intensity  (71 genes)  TAS  
GO:0009658 [list] [network] chloroplast organization  (197 genes)  NAS  
GO:0009657 [list] [network] plastid organization  (265 genes)  IMP  
GO:0009266 [list] [network] response to temperature stimulus  (682 genes)  TAS  
GO CC
GO:0009579 [list] [network] thylakoid  (507 genes)  IDA  
GO:0005739 [list] [network] mitochondrion  (4244 genes)  ISM  
GO MF
GO:0106292 [list] [network] superoxide-generating NADPH oxidase activity  (6 genes)  IDA  
GO:0009916 [list] [network] alternative oxidase activity  (7 genes)  ISS  
Protein NP_567658.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 7,  chlo_mito 5,  mito 2  (predict for NP_567658.1)
Subcellular
localization
TargetP
chlo 9,  mito 3  (predict for NP_567658.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-u.5
for
IM
ath-r.7
for
IM
ath-m.9
for
IM
ath-e.2
for
IM
ath-m.4.bio
for
IM
ath-m.4.hor
for
IM
ath-m.4.lig
for
IM
ath-m.4.str
for
IM
ath-m.4.tis
for
IM
bra-r.6
for
103859909
bna-r.1
for
106376504
bna-r.1
for
106437635
ghi-r.1
for
107905673
ghi-r.1
for
107905897
cit-r.1
for
102578048
gma-u.5
for
PTOX
gma-u.5
for
100807967
vvi-u.5
for
100258527
ppo-u.5
for
18097290
ppo-u.5
for
7485412
mtr-u.5
for
11446887
sly-u.5
for
PTOX
sot-r.1
for
102605095
nta-r.1
for
107827194
nta-r.1
for
107773225
osa-u.5
for
4337339
osa-u.5
for
9266028
zma-u.5
for
100284413
zma-u.5
for
100273671
tae-r.2
for
123047283
tae-r.2
for
123055085
tae-r.2
for
123190937
hvu-r.1
for
123428440
sbi-r.1
for
8070294
sbi-r.1
for
110436369
bdi-r.1
for
100836303
cre-r.1
for
CHLRE_03g172500v5
cre-r.1
for
CHLRE_07g350750v5


Ortholog ID: 7672
Species ath bra bna bna ghi ghi cit gma gma vvi ppo ppo mtr sly sot nta nta osa osa zma zma tae tae tae hvu sbi sbi bdi cre cre
Symbol IM LOC103859909 LOC106376504 LOC106437635 LOC107905673 LOC107905897 LOC102578048 PTOX LOC100807967 LOC100258527 LOC18097290 LOC7485412 LOC11446887 PTOX LOC102605095 LOC107827194 LOC107773225 LOC4337339 LOC9266028 LOC100284413 LOC100273671 LOC123047283 LOC123055085 LOC123190937 LOC123428440 LOC8070294 LOC110436369 LOC100836303 CHLRE_03g172500v5 CHLRE_07g350750v5
Function* Alternative oxidase family protein ubiquinol oxidase 4, chloroplastic/chromoplastic ubiquinol oxidase 4, chloroplastic/chromoplastic-like ubiquinol oxidase 4, chloroplastic/chromoplastic ubiquinol oxidase 4, chloroplastic/chromoplastic ubiquinol oxidase 4, chloroplastic/chromoplastic ubiquinol oxidase 4, chloroplastic/chromoplastic plastid terminal oxidase ubiquinol oxidase 4, chloroplastic/chromoplastic ubiquinol oxidase 4, chloroplastic/chromoplastic ubiquinol oxidase 4, chloroplastic/chromoplastic ubiquinol oxidase 4, chloroplastic/chromoplastic ubiquinol oxidase 4, chloroplastic/chromoplastic plastid quinol oxidase ubiquinol oxidase 4, chloroplastic/chromoplastic ubiquinol oxidase 4, chloroplastic/chromoplastic-like ubiquinol oxidase 4, chloroplastic/chromoplastic ubiquinol oxidase 4, chloroplastic/chromoplastic ubiquinol oxidase 4, chloroplastic/chromoplastic uncharacterized LOC100284413 alternative oxidase ubiquinol oxidase 4, chloroplastic/chromoplastic ubiquinol oxidase 4, chloroplastic/chromoplastic ubiquinol oxidase 4, chloroplastic/chromoplastic ubiquinol oxidase 4, chloroplastic/chromoplastic ubiquinol oxidase 4, chloroplastic/chromoplastic ubiquinol oxidase 4, chloroplastic/chromoplastic-like ubiquinol oxidase 4, chloroplastic/chromoplastic uncharacterized protein uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00630 Glyoxylate and dicarboxylate metabolism 2
bra01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00500 Starch and sucrose metabolism 8
bna00520 Amino sugar and nucleotide sugar metabolism 2
bna01250 Biosynthesis of nucleotide sugars 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00500 Starch and sucrose metabolism 8
bna00520 Amino sugar and nucleotide sugar metabolism 2
bna01250 Biosynthesis of nucleotide sugars 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00600 Sphingolipid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00600 Sphingolipid metabolism 2
ghi04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00480 Glutathione metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00740 Riboflavin metabolism 2
gma01240 Biosynthesis of cofactors 2
gma04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00190 Oxidative phosphorylation 4
gma01240 Biosynthesis of cofactors 3
gma00740 Riboflavin metabolism 2
gma00564 Glycerophospholipid metabolism 2
gma00592 alpha-Linolenic acid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04712 Circadian rhythm - plant 4
mtr00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04712 Circadian rhythm - plant 2
sot00591 Linoleic acid metabolism 2
sot04142 Lysosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00500 Starch and sucrose metabolism 2
nta00730 Thiamine metabolism 2
nta01240 Biosynthesis of cofactors 2
nta04146 Peroxisome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04146 Peroxisome 5
nta00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa01240 Biosynthesis of cofactors 2
osa00860 Porphyrin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00190 Oxidative phosphorylation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre01200 Carbon metabolism 4
cre01230 Biosynthesis of amino acids 2
cre00020 Citrate cycle (TCA cycle) 2
cre00500 Starch and sucrose metabolism 2
cre00030 Pentose phosphate pathway 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 828321 103859909 106376504 106437635 107905673 107905897 102578048 100813378 100807967 100258527 18097290 7485412 11446887 543670 102605095 107827194 107773225 4337339 9266028 100284413 100273671 123047283 123055085 123190937 123428440 8070294 110436369 100836303 5728910 5718064
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