ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
ath-u.5	MRB1	transmembrane protein, putative (DUF3537)
ath-r.7	MRB1	transmembrane protein, putative (DUF3537)
ath-m.9	MRB1	transmembrane protein, putative (DUF3537)
ath-e.2	MRB1	transmembrane protein, putative (DUF3537)
ath-m.4.bio	MRB1	transmembrane protein, putative (DUF3537)
ath-m.4.hor	MRB1	transmembrane protein, putative (DUF3537)
ath-m.4.lig	MRB1	transmembrane protein, putative (DUF3537)
ath-m.4.str	MRB1	transmembrane protein, putative (DUF3537)
ath-m.4.tis	MRB1	transmembrane protein, putative (DUF3537)
ath-u.5	AT3G20300	extracellular ligand-gated ion channel protein (DUF3537)
ath-u.5	AT1G50630	extracellular ligand-gated ion channel protein (DUF3537)
bra-r.6	103871333	uncharacterized LOC103871333
bra-r.6	103859848	uncharacterized LOC103859848
bna-r.1	BNAC05G31730D	uncharacterized BNAC05G31730D
bna-r.1	BNAC03G41510D	uncharacterized BNAC03G41510D
bna-r.1	BNAA01G12090D	uncharacterized BNAA01G12090D
ghi-r.1	107935405	uncharacterized LOC107935405
ghi-r.1	107932714	uncharacterized LOC107932714
ghi-r.1	107925294	uncharacterized LOC107925294
cit-r.1	102613657	hypothetical protein
cit-r.1	102610018	hypothetical protein
gma-u.5	100816572	uncharacterized LOC100816572
gma-u.5	100809035	uncharacterized LOC100809035
vvi-u.5	100245205	uncharacterized LOC100245205
ppo-u.5	7478701	uncharacterized LOC7478701
mtr-u.5	11443885	uncharacterized LOC11443885
mtr-u.5	25489025	uncharacterized LOC25489025
sly-u.5	101249979	uncharacterized LOC101249979
sly-u.5	101267356	uncharacterized LOC101267356
sly-u.5	101266537	uncharacterized LOC101266537
sot-r.1	102597876	uncharacterized LOC102597876
sot-r.1	102602141	uncharacterized LOC102602141
sot-r.1	102604757	uncharacterized LOC102604757
nta-r.1	107773127	uncharacterized LOC107773127
nta-r.1	107761533	uncharacterized LOC107761533
nta-r.1	107759973	uncharacterized LOC107759973
osa-u.5	4329709	uncharacterized LOC4329709
osa-u.5	4341599	uncharacterized LOC4341599
zma-u.5	100275775	uncharacterized LOC100275775
zma-u.5	100216686	F11F12.5 protein
tae-r.2	123148320	uncharacterized LOC123148320
hvu-r.1	123424569	uncharacterized LOC123424569
hvu-r.1	123411910	uncharacterized LOC123411910
sbi-r.1	8067683	uncharacterized LOC8067683
sbi-r.1	8068922	uncharacterized LOC8068922
bdi-r.1	100828011	uncharacterized LOC100828011
bdi-r.1	100842014	uncharacterized LOC100842014

Top 50 coexpressed genes to MRB1 (ath-u.5 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to MRB1 (ath-u.5 coexpression data)

CoexMap"828322"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO:0035265 [list] [network] organ growth	(12 genes)	IMP
GO:0051302 [list] [network] regulation of cell division	(78 genes)	IMP

GO CC

GO:0005886 [list] [network] plasma membrane	(2598 genes)	IDA
GO:0005739 [list] [network] mitochondrion	(4244 genes)	ISM
GO:0009507 [list] [network] chloroplast	(5014 genes)	ISM

GO MF

Protein

NP_001329910.1 [sequence] [blastp]
NP_567659.1 [sequence] [blastp]

Subcellular
localization
wolf

cyto 5, nucl 1, plas 1, nucl_plas 1	(predict for NP_001329910.1)
cyto 5, nucl 1, chlo 1, plas 1, vacu 1, E.R. 1, golg 1, cysk_nucl 1, golg_plas 1, E.R._vacu 1, E.R._plas 1	(predict for NP_567659.1)

Subcellular
localization
TargetP

other 8	(predict for NP_001329910.1)
other 8	(predict for NP_567659.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target				Condition-specific^*					Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	ath-u.5 for MRB1	ath-r.7 for MRB1	ath-m.9 for MRB1	ath-e.2 for MRB1	ath-m.4.bio for MRB1	ath-m.4.hor for MRB1	ath-m.4.lig for MRB1	ath-m.4.str for MRB1	ath-m.4.tis for MRB1	ath-u.5 for AT3G20300	ath-u.5 for AT1G50630	bra-r.6 for 103871333	bra-r.6 for 103859848	bna-r.1 for BNAC05G31730D	bna-r.1 for BNAC03G41510D	bna-r.1 for BNAA01G12090D	ghi-r.1 for 107935405	ghi-r.1 for 107932714	ghi-r.1 for 107925294	cit-r.1 for 102613657	cit-r.1 for 102610018	gma-u.5 for 100816572	gma-u.5 for 100809035	vvi-u.5 for 100245205	ppo-u.5 for 7478701	mtr-u.5 for 11443885	mtr-u.5 for 25489025	sly-u.5 for 101249979	sly-u.5 for 101267356	sly-u.5 for 101266537	sot-r.1 for 102597876	sot-r.1 for 102602141	sot-r.1 for 102604757	nta-r.1 for 107773127	nta-r.1 for 107761533	nta-r.1 for 107759973	osa-u.5 for 4329709	osa-u.5 for 4341599	zma-u.5 for 100275775	zma-u.5 for 100216686	tae-r.2 for 123148320	hvu-r.1 for 123424569	hvu-r.1 for 123411910	sbi-r.1 for 8067683	sbi-r.1 for 8068922	bdi-r.1 for 100828011	bdi-r.1 for 100842014

Ortholog

Ortholog ID: 1392

Species

ath

bra

bna

ghi

cit

gma

vvi

ppo

mtr

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

Symbol

MRB1

Function^*

transmembrane protein, putative (DUF3537)

extracellular ligand-gated ion channel protein (DUF3537)

uncharacterized LOC103871333

uncharacterized LOC103859848

uncharacterized LOC103861292

uncharacterized LOC106357506

uncharacterized LOC106399274

uncharacterized BNAC01G13780D

uncharacterized LOC107932714

uncharacterized LOC107925294

uncharacterized LOC107918196

hypothetical protein

uncharacterized LOC100816572

uncharacterized LOC100809035

uncharacterized LOC100245205

uncharacterized LOC7478701

uncharacterized LOC11443885

uncharacterized LOC25489025

uncharacterized LOC101267356

uncharacterized LOC101266537

uncharacterized LOC101243767

uncharacterized LOC102602141

uncharacterized LOC102604757

uncharacterized LOC102588767

uncharacterized LOC107759973

uncharacterized LOC107773998

uncharacterized LOC107776770

uncharacterized LOC4329709

uncharacterized LOC4341599

uncharacterized LOC100275775

F11F12.5 protein

uncharacterized LOC103628708

uncharacterized LOC123148320

uncharacterized LOC123180407

uncharacterized LOC123424569

uncharacterized LOC123411910

uncharacterized LOC8067683

uncharacterized LOC8068922

uncharacterized LOC100828011

uncharacterized LOC100842014

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath01200	Carbon metabolism	2
ath00562	Inositol phosphate metabolism	2
ath04070	Phosphatidylinositol signaling system	2
ath00195	Photosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath02010	ABC transporters	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra00630	Glyoxylate and dicarboxylate metabolism	3
bra01200	Carbon metabolism	3
bra00020	Citrate cycle (TCA cycle)	2
bra00270	Cysteine and methionine metabolism	2
bra00566	Sulfoquinovose metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna00940	Phenylpropanoid biosynthesis	3
bna00500	Starch and sucrose metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi04075	Plant hormone signal transduction	7
ghi03018	RNA degradation	4
ghi00600	Sphingolipid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00030	Pentose phosphate pathway	4
ghi01200	Carbon metabolism	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi04814	Motor proteins	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit04120	Ubiquitin mediated proteolysis	2
cit01040	Biosynthesis of unsaturated fatty acids	2
cit01212	Fatty acid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr00910	Nitrogen metabolism	3
mtr04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03040	Spliceosome	4
sot04141	Protein processing in endoplasmic reticulum	3
sot04144	Endocytosis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot04075	Plant hormone signal transduction	6
sot04016	MAPK signaling pathway - plant	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04016	MAPK signaling pathway - plant	5
nta04075	Plant hormone signal transduction	5
nta04626	Plant-pathogen interaction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00906	Carotenoid biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta02010	ABC transporters	2
nta04981	Folate transport and metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma04016	MAPK signaling pathway - plant	3
zma04075	Plant hormone signal transduction	3
zma00906	Carotenoid biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma04016	MAPK signaling pathway - plant	4
zma04075	Plant hormone signal transduction	4
zma00906	Carotenoid biosynthesis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae01240	Biosynthesis of cofactors	3
tae00740	Riboflavin metabolism	2
tae00790	Folate biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu01230	Biosynthesis of amino acids	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi04075	Plant hormone signal transduction	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi01040	Biosynthesis of unsaturated fatty acids	2
bdi01212	Fatty acid metabolism	2

Expression

Expression pattern

Entrez Gene ID^*

828322

821574

841485

103871333

103859848

103861292

106357506

106399274

106437634

107932714

107925294

107918196

102613657

102610018

100816572

100809035

100245205

7478701

11443885

25489025

101267356

101266537

101243767

102602141

102604757

102588767

107759973

107773998

107776770

4329709

4341599

100275775

100216686

103628708

123148320

123180407

123424569

123411910

8067683

8068922

100828011

100842014

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Species	ath	bra	bna	ghi	cit	gma	vvi	ppo	mtr	sly	sot	nta	osa	zma	tae	hvu	sbi	bdi	cre
Paralog	11	2	3	3	2	2	1	1	2	3	3	3	2	2	1	2	2	2	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to MRB1 (ath-u.5 coexpression data)

Top 50 enrichment test to MRB1 (ath-u.5 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**