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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-u.5   AT4G24710   pachytene checkpoint-like protein 
 ath-r.7   AT4G24710   pachytene checkpoint-like protein 
 ath-m.9   AT4G24710   pachytene checkpoint-like protein 
 ath-e.2   AT4G24710   pachytene checkpoint-like protein 
 ath-m.4.bio   AT4G24710   pachytene checkpoint-like protein 
 ath-m.4.hor   AT4G24710   pachytene checkpoint-like protein 
 ath-m.4.lig   AT4G24710   pachytene checkpoint-like protein 
 ath-m.4.str   AT4G24710   pachytene checkpoint-like protein 
 ath-m.4.tis   AT4G24710   pachytene checkpoint-like protein 
 gma-u.5   100812167   pachytene checkpoint protein 2 homolog 
 gma-u.5   100795009   pachytene checkpoint protein 2 homolog 
 mtr-u.5   11418234   pachytene checkpoint protein 2 homolog 
 sly-u.5   101262093   pachytene checkpoint protein 2 homolog 
 zma-u.5   100193425   thyroid receptor-interacting protein 13 

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Top 50 coexpressed genes to AT4G24710 (ath-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to AT4G24710 (ath-u.5 coexpression data)

CoexMap"828573"


athAT4G24710 | Entrez gene ID : 828573      
Species ath gma mtr sly zma bdi hvu bra vvi cit bna ppo sbi ghi osa sot nta cre tae
Paralog 9 2 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0007130 [list] [network] synaptonemal complex assembly  (7 genes)  IMP  
GO:0051026 [list] [network] chiasma assembly  (16 genes)  IMP  
GO:0007129 [list] [network] homologous chromosome pairing at meiosis  (31 genes)  IMP  
GO CC
GO:0000795 [list] [network] synaptonemal complex  (7 genes)  IDA  
GO:0005694 [list] [network] chromosome  (230 genes)  IDA  
GO:0005634 [list] [network] nucleus  (10367 genes)  ISM  
GO:0005737 [list] [network] cytoplasm  (14000 genes)  ISM  
GO MF
GO:0016887 [list] [network] ATP hydrolysis activity  (205 genes)  IEA  
Protein NP_001320058.1 [sequence] [blastp]
NP_001328224.1 [sequence] [blastp]
NP_001328225.1 [sequence] [blastp]
NP_194202.4 [sequence] [blastp]
Subcellular
localization
wolf
cyto 4,  chlo 3,  cyto_nucl 3  (predict for NP_001320058.1)
cyto 9  (predict for NP_001328224.1)
cyto 9  (predict for NP_001328225.1)
cyto 6,  chlo 2,  vacu 1  (predict for NP_194202.4)
Subcellular
localization
TargetP
other 5,  chlo 3  (predict for NP_001320058.1)
other 8  (predict for NP_001328224.1)
other 8  (predict for NP_001328225.1)
other 8  (predict for NP_194202.4)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-u.5
for
AT4G24710
ath-r.7
for
AT4G24710
ath-m.9
for
AT4G24710
ath-e.2
for
AT4G24710
ath-m.4.bio
for
AT4G24710
ath-m.4.hor
for
AT4G24710
ath-m.4.lig
for
AT4G24710
ath-m.4.str
for
AT4G24710
ath-m.4.tis
for
AT4G24710
gma-u.5
for
100812167
gma-u.5
for
100795009
mtr-u.5
for
11418234
sly-u.5
for
101262093
zma-u.5
for
100193425


Ortholog ID: 9608
Species ath bra ghi ghi gma gma mtr sly sot nta nta zma tae hvu sbi bdi cre
Symbol AT4G24710 LOC103862485 LOC107949644 LOC107886216 LOC100795009 LOC100812167 LOC11418234 LOC101262093 LOC102601635 LOC107828050 LOC107817310 LOC100193425 LOC123189535 LOC123427008 LOC8058718 LOC100843522 CHLRE_02g117150v5
Function* pachytene checkpoint-like protein pachytene checkpoint protein 2 homolog pachytene checkpoint protein 2 homolog pachytene checkpoint protein 2 homolog pachytene checkpoint protein 2 homolog pachytene checkpoint protein 2 homolog pachytene checkpoint protein 2 homolog pachytene checkpoint protein 2 homolog pachytene checkpoint protein 2 homolog pachytene checkpoint protein 2 homolog pachytene checkpoint protein 2 homolog thyroid receptor-interacting protein 13 pachytene checkpoint protein 2 homolog pachytene checkpoint protein 2 homolog pachytene checkpoint protein 2 homolog pachytene checkpoint protein 2 homolog uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04814 Motor proteins 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03030 DNA replication 3
ghi03460 Fanconi anemia pathway 2
ghi03430 Mismatch repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03030 DNA replication 3
ghi03460 Fanconi anemia pathway 2
ghi03430 Mismatch repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00270 Cysteine and methionine metabolism 4
gma03030 DNA replication 2
gma03420 Nucleotide excision repair 2
gma03430 Mismatch repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03030 DNA replication 6
gma00240 Pyrimidine metabolism 3
gma01232 Nucleotide metabolism 3
gma03420 Nucleotide excision repair 3
gma03460 Fanconi anemia pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03030 DNA replication 3
mtr03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04148 Efferocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00230 Purine metabolism 2
sot00240 Pyrimidine metabolism 2
sot00480 Glutathione metabolism 2
sot01232 Nucleotide metabolism 2
sot00270 Cysteine and methionine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03030 DNA replication 2
nta00010 Glycolysis / Gluconeogenesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03030 DNA replication 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03030 DNA replication 6
zma03430 Mismatch repair 3
zma03410 Base excision repair 3
zma03420 Nucleotide excision repair 3
zma03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03030 DNA replication 7
tae03430 Mismatch repair 4
tae00230 Purine metabolism 3
tae00240 Pyrimidine metabolism 3
tae00480 Glutathione metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03030 DNA replication 4
sbi00944 Flavone and flavonol biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03030 DNA replication 5
bdi03440 Homologous recombination 3
bdi03460 Fanconi anemia pathway 3
bdi03430 Mismatch repair 2
bdi03420 Nucleotide excision repair 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 828573 103862485 107949644 107886216 100795009 100812167 11418234 101262093 102601635 107828050 107817310 100193425 123189535 123427008 8058718 100843522 5725192
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