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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-u.5   ABCB28   non-intrinsic ABC protein 8 
 ath-r.7   ABCB28   non-intrinsic ABC protein 8 
 ath-m.9   ABCB28   non-intrinsic ABC protein 8 
 ath-e.2   ABCB28   non-intrinsic ABC protein 8 
 ath-m.4.bio   ABCB28   non-intrinsic ABC protein 8 
 ath-m.4.hor   ABCB28   non-intrinsic ABC protein 8 
 ath-m.4.lig   ABCB28   non-intrinsic ABC protein 8 
 ath-m.4.str   ABCB28   non-intrinsic ABC protein 8 
 ath-m.4.tis   ABCB28   non-intrinsic ABC protein 8 
 gma-u.5   100791034   ABC transporter B family member 28 
 vvi-u.5   100262436   ABC transporter B family member 28 
 ppo-u.5   7454471   ABC transporter B family member 28 
 mtr-u.5   25497236   ABC transporter B family member 28 
 sly-u.5   ABCB20   ABC transporter B family member 20 
 osa-u.5   4343172   ABC transporter B family member 28 
 zma-u.5   103632317   ABC transporter B family member 28 

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Top 50 coexpressed genes to ABCB28 (ath-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to ABCB28 (ath-u.5 coexpression data)

CoexMap"828650"


athABCB28 | Entrez gene ID : 828650      
Species ath gma vvi ppo mtr sly osa zma tae hvu ghi bdi cit bra cre sbi bna nta sot
Paralog 9 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG ath02010 [list] [network] ABC transporters (68 genes)
GO BP
GO:0055085 [list] [network] transmembrane transport  (543 genes)  IEA  
GO CC
GO:0009941 [list] [network] chloroplast envelope  (585 genes)  HDA  
GO:0005829 [list] [network] cytosol  (2593 genes)  HDA  
GO:0009507 [list] [network] chloroplast  (5014 genes)  HDA  
GO MF
GO:0140359 [list] [network] ABC-type transporter activity  (40 genes)  IEA  
GO:0042626 [list] [network] ATPase-coupled transmembrane transporter activity  (192 genes)  ISS  
GO:0016887 [list] [network] ATP hydrolysis activity  (205 genes)  IEA  
GO:0022857 [list] [network] transmembrane transporter activity  (1015 genes)  ISS  
Protein NP_001031714.1 [sequence] [blastp]
NP_001078446.1 [sequence] [blastp]
NP_194275.2 [sequence] [blastp]
Subcellular
localization
wolf
chlo 8,  mito 1  (predict for NP_001031714.1)
chlo 5,  E.R. 2,  mito 1,  cyto_E.R. 1  (predict for NP_001078446.1)
chlo 8,  mito 1  (predict for NP_194275.2)
Subcellular
localization
TargetP
mito 6,  chlo 5  (predict for NP_001031714.1)
other 4,  mito 4  (predict for NP_001078446.1)
mito 6,  chlo 5  (predict for NP_194275.2)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-u.5
for
ABCB28

.
ath-r.7
for
ABCB28

.
ath-m.9
for
ABCB28

.
ath-e.2
for
ABCB28

.
ath-m.4.bio
for
ABCB28

.
ath-m.4.hor
for
ABCB28

.
ath-m.4.lig
for
ABCB28

.
ath-m.4.str
for
ABCB28

.
ath-m.4.tis
for
ABCB28

.
gma-u.5
for
100791034

.
vvi-u.5
for
100262436

.
ppo-u.5
for
7454471

.
mtr-u.5
for
25497236

.
sly-u.5
for
ABCB20

.
osa-u.5
for
4343172

.
zma-u.5
for
103632317

.


Ortholog ID: 10220
Species ath gma sly osa zma bra vvi ppo mtr tae tae hvu ghi ghi bna bna cre sbi sot cit bdi nta nta
Symbol ABCB28 LOC100791034 ABCB20 LOC4343172 LOC103632317 LOC103834871 LOC100262436 LOC7454471 LOC25497236 LOC123157259 LOC123165510 LOC123409648 LOC107946793 LOC107917974 LOC106426460 LOC106361330 CHLRE_16g669525v5 LOC110432523 LOC102592142 LOC102617635 LOC100837760 LOC107791508 LOC107770825
Function* non-intrinsic ABC protein 8 ABC transporter B family member 28 ABC transporter B family member 20 ABC transporter B family member 28 ABC transporter B family member 28 ABC transporter B family member 28 ABC transporter B family member 28 ABC transporter B family member 28 ABC transporter B family member 28 ABC transporter B family member 28 ABC transporter B family member 28 ABC transporter B family member 28 ABC transporter B family member 28 ABC transporter B family member 28 ABC transporter B family member 28 ABC transporter B family member 28 uncharacterized protein ABC transporter B family member 28 ABC transporter B family member 28 ABC transporter B family member 28 ABC transporter B family member 28 ABC transporter B family member 28 ABC transporter B family member 28
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi02010 ABC transporters 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00740 Riboflavin metabolism 6
mtr01240 Biosynthesis of cofactors 6
mtr00790 Folate biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae02010 ABC transporters 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae02010 ABC transporters 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00970 Aminoacyl-tRNA biosynthesis 2
hvu03010 Ribosome 2
hvu03060 Protein export 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00240 Pyrimidine metabolism 2
ghi01232 Nucleotide metabolism 2
ghi01240 Biosynthesis of cofactors 2
ghi02010 ABC transporters 2
ghi00750 Vitamin B6 metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00240 Pyrimidine metabolism 2
ghi01232 Nucleotide metabolism 2
ghi01240 Biosynthesis of cofactors 2
ghi02010 ABC transporters 2
ghi00750 Vitamin B6 metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00500 Starch and sucrose metabolism 2
bna03060 Protein export 2
bna04016 MAPK signaling pathway - plant 2
bna02010 ABC transporters 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00561 Glycerolipid metabolism 3
bna00500 Starch and sucrose metabolism 2
bna03060 Protein export 2
bna04016 MAPK signaling pathway - plant 2
bna02010 ABC transporters 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00970 Aminoacyl-tRNA biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00970 Aminoacyl-tRNA biosynthesis 6
nta00130 Ubiquinone and other terpenoid-quinone biosynthesis 3
nta01240 Biosynthesis of cofactors 3
nta00450 Selenocompound metabolism 2
nta02010 ABC transporters 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00970 Aminoacyl-tRNA biosynthesis 6
nta00130 Ubiquinone and other terpenoid-quinone biosynthesis 3
nta01240 Biosynthesis of cofactors 3
nta00450 Selenocompound metabolism 2
nta02010 ABC transporters 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 828650 100791034 101261891 4343172 103632317 103834871 100262436 7454471 25497236 123157259 123165510 123409648 107946793 107917974 106426460 106361330 5717705 110432523 102592142 102617635 100837760 107791508 107770825
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