Select Species**


OK


Orthologous genes in OrthoFinder**

Species Gene Description
 ath-u.5   AT4G28450   WD repeat and SOF domain-containing protein 1 
 ath-r.7   AT4G28450   WD repeat and SOF domain-containing protein 1 
 ath-m.9   AT4G28450   WD repeat and SOF domain-containing protein 1 
 ath-e.2   AT4G28450   WD repeat and SOF domain-containing protein 1 
 ath-m.4.bio   AT4G28450   WD repeat and SOF domain-containing protein 1 
 ath-m.4.hor   AT4G28450   WD repeat and SOF domain-containing protein 1 
 ath-m.4.lig   AT4G28450   WD repeat and SOF domain-containing protein 1 
 ath-m.4.str   AT4G28450   WD repeat and SOF domain-containing protein 1 
 ath-m.4.tis   AT4G28450   WD repeat and SOF domain-containing protein 1 
 gma-u.5   100812671   DDB1- and CUL4-associated factor 13 
 vvi-u.5   100260774   uncharacterized LOC100260774 
 ppo-u.5   7459966   uncharacterized LOC7459966 
 ppo-u.5   18106796   uncharacterized LOC18106796 
 mtr-u.5   11414546   DDB1- and CUL4-associated factor 13 
 sly-u.5   101251902   uncharacterized LOC101251902 
 osa-u.5   4326362   uncharacterized LOC4326362 
 zma-u.5   100273845   protein SOF1 

close


Top 50 coexpressed genes to AT4G28450 (ath-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

close

close

Top 50 enrichment test to AT4G28450 (ath-u.5 coexpression data)

CoexMap"828962"


athAT4G28450 | Entrez gene ID : 828962      
Species ath gma vvi ppo mtr sly osa zma sbi nta bra cre hvu cit bdi sot tae bna ghi
Paralog 9 1 1 2 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO CC
GO:0080008 [list] [network] Cul4-RING E3 ubiquitin ligase complex  (121 genes)  IPI  
GO:0005634 [list] [network] nucleus  (10367 genes)  ISM  
GO MF
GO:0005515 [list] [network] protein binding  (5363 genes)  IPI  
Protein NP_567810.5 [sequence] [blastp]
Subcellular
localization
wolf
nucl 6,  chlo 2,  cyto 1,  mito 1,  cysk 1  (predict for NP_567810.5)
Subcellular
localization
TargetP
other 6,  mito 4  (predict for NP_567810.5)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-u.5
for
AT4G28450

.
ath-r.7
for
AT4G28450

.
ath-m.9
for
AT4G28450

.
ath-e.2
for
AT4G28450

.
ath-m.4.bio
for
AT4G28450

.
ath-m.4.hor
for
AT4G28450

.
ath-m.4.lig
for
AT4G28450

.
ath-m.4.str
for
AT4G28450

.
ath-m.4.tis
for
AT4G28450

.
gma-u.5
for
100812671

.
vvi-u.5
for
100260774

.
ppo-u.5
for
7459966

.
ppo-u.5
for
18106796

.
mtr-u.5
for
11414546

.
sly-u.5
for
101251902

.
osa-u.5
for
4326362

.
zma-u.5
for
100273845

.


Ortholog ID: 10231
Species ath gma sly osa zma bra vvi ppo ppo mtr tae tae hvu ghi ghi bna cre sbi sbi sot cit bdi nta nta
Symbol AT4G28450 LOC100812671 LOC101251902 LOC4326362 LOC100273845 LOC103861832 LOC100260774 LOC7459966 LOC18106796 LOC11414546 LOC123077935 LOC123060847 LOC123443297 LOC107909268 LOC107886796 LOC106440997 CHLRE_07g318702v5 LOC8061393 LOC8077546 LOC102585720 LOC102621530 LOC100837448 LOC107809218 LOC107820775
Function* WD repeat and SOF domain-containing protein 1 DDB1- and CUL4-associated factor 13 uncharacterized LOC101251902 uncharacterized LOC4326362 protein SOF1 DDB1- and CUL4-associated factor 13 uncharacterized LOC100260774 uncharacterized LOC7459966 uncharacterized LOC18106796 DDB1- and CUL4-associated factor 13 DDB1- and CUL4-associated factor 13 DDB1- and CUL4-associated factor 13 DDB1- and CUL4-associated factor 13 DDB1- and CUL4-associated factor 13 DDB1- and CUL4-associated factor 13 DDB1- and CUL4-associated factor 13 uncharacterized protein DDB1- and CUL4-associated factor 13 DDB1- and CUL4-associated factor 13 DDB1- and CUL4-associated factor 13 uncharacterized LOC102621530 DDB1- and CUL4-associated factor 13 uncharacterized LOC107809218 uncharacterized LOC107820775
Coexmap

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.
Coexpression

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.
KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03008 Ribosome biogenesis in eukaryotes 5
ath03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03008 Ribosome biogenesis in eukaryotes 3
gma03020 RNA polymerase 2
gma03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03008 Ribosome biogenesis in eukaryotes 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03040 Spliceosome 4
osa03008 Ribosome biogenesis in eukaryotes 3
osa04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03008 Ribosome biogenesis in eukaryotes 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03008 Ribosome biogenesis in eukaryotes 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03008 Ribosome biogenesis in eukaryotes 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03008 Ribosome biogenesis in eukaryotes 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03010 Ribosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03008 Ribosome biogenesis in eukaryotes 4
ghi03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03008 Ribosome biogenesis in eukaryotes 4
ghi03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03008 Ribosome biogenesis in eukaryotes 6
cre03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03030 DNA replication 2
sbi00970 Aminoacyl-tRNA biosynthesis 2
sbi03020 RNA polymerase 2
sbi03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03008 Ribosome biogenesis in eukaryotes 6
sot00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03008 Ribosome biogenesis in eukaryotes 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03010 Ribosome 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03010 Ribosome 4
nta00280 Valine, leucine and isoleucine degradation 2
nta00410 beta-Alanine metabolism 2
nta00640 Propanoate metabolism 2
nta01200 Carbon metabolism 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 828962 100812671 101251902 4326362 100273845 103861832 100260774 7459966 18106796 11414546 123077935 123060847 123443297 107909268 107886796 106440997 5726563 8061393 8077546 102585720 102621530 100837448 107809218 107820775
The preparation time of this page was 0.1 [sec].