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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-u.5   AT4G28550   Ypt/Rab-GAP domain of gyp1p superfamily protein 
 ath-r.7   AT4G28550   Ypt/Rab-GAP domain of gyp1p superfamily protein 
 ath-m.9   AT4G28550   Ypt/Rab-GAP domain of gyp1p superfamily protein 
 ath-e.2   AT4G28550   Ypt/Rab-GAP domain of gyp1p superfamily protein 
 ath-m.4.bio   AT4G28550   Ypt/Rab-GAP domain of gyp1p superfamily protein 
 ath-m.4.hor   AT4G28550   Ypt/Rab-GAP domain of gyp1p superfamily protein 
 ath-m.4.lig   AT4G28550   Ypt/Rab-GAP domain of gyp1p superfamily protein 
 ath-m.4.str   AT4G28550   Ypt/Rab-GAP domain of gyp1p superfamily protein 
 ath-m.4.tis   AT4G28550   Ypt/Rab-GAP domain of gyp1p superfamily protein 
 ath-u.5   AT2G20440   Ypt/Rab-GAP domain of gyp1p superfamily protein 
 ath-u.5   AT4G27100   Ypt/Rab-GAP domain of gyp1p superfamily protein 
 ath-u.5   AT5G54780   Ypt/Rab-GAP domain of gyp1p superfamily protein 
 gma-u.5   100805808   rab GTPase-activating protein 22 
 gma-u.5   100789903   rab GTPase-activating protein 22 
 gma-u.5   100785775   rab GTPase-activating protein 22 
 vvi-u.5   100251529   rab GTPase-activating protein 22 
 vvi-u.5   100250247   rab GTPase-activating protein 22 
 ppo-u.5   7470936   uncharacterized LOC7470936 
 ppo-u.5   18095918   uncharacterized LOC18095918 
 ppo-u.5   7454359   uncharacterized LOC7454359 
 mtr-u.5   11415615   rab GTPase-activating protein 22 
 mtr-u.5   11443375   TBC1 domain family member 17 
 mtr-u.5   25484234   rab GTPase-activating protein 22 
 sly-u.5   101254845   rab GTPase-activating protein 22 
 sly-u.5   101261487   rab GTPase-activating protein 22 
 sly-u.5   101251919   TBC1 domain family protein 
 osa-u.5   4331097   rab GTPase-activating protein 22 
 osa-u.5   4343429   rab GTPase-activating protein 22 
 osa-u.5   4350806   TBC1 domain family member 15 
 zma-u.5   100282248   TBC domain containing protein 
 zma-u.5   100281478   TBC domain containing protein 
 zma-u.5   100281686   uncharacterized LOC100281686 

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Top 50 coexpressed genes to AT4G28550 (ath-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to AT4G28550 (ath-u.5 coexpression data)

CoexMap"828973"


athAT4G28550 | Entrez gene ID : 828973      
Species ath gma vvi ppo mtr sly osa zma bdi hvu bra cit bna sbi ghi sot nta cre tae
Paralog 12 3 2 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO CC
GO:0005737 [list] [network] cytoplasm  (14000 genes)  ISM  
GO MF
Protein NP_001329672.1 [sequence] [blastp]
NP_001329673.1 [sequence] [blastp]
NP_194584.3 [sequence] [blastp]
Subcellular
localization
wolf
cyto 7,  nucl 2  (predict for NP_001329672.1)
cyto 6,  nucl 2,  extr 1,  vacu 1  (predict for NP_001329673.1)
cyto 5,  nucl 3,  cysk 2  (predict for NP_194584.3)
Subcellular
localization
TargetP
other 8  (predict for NP_001329672.1)
other 8  (predict for NP_001329673.1)
other 8  (predict for NP_194584.3)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-u.5
for
AT4G28550
ath-r.7
for
AT4G28550
ath-m.9
for
AT4G28550
ath-e.2
for
AT4G28550
ath-m.4.bio
for
AT4G28550
ath-m.4.hor
for
AT4G28550
ath-m.4.lig
for
AT4G28550
ath-m.4.str
for
AT4G28550
ath-m.4.tis
for
AT4G28550
ath-u.5
for
AT2G20440
ath-u.5
for
AT4G27100
ath-u.5
for
AT5G54780
gma-u.5
for
100805808
gma-u.5
for
100789903
gma-u.5
for
100785775
vvi-u.5
for
100251529
vvi-u.5
for
100250247
ppo-u.5
for
7470936
ppo-u.5
for
18095918
ppo-u.5
for
7454359
mtr-u.5
for
11415615
mtr-u.5
for
11443375
mtr-u.5
for
25484234
sly-u.5
for
101254845
sly-u.5
for
101261487
sly-u.5
for
101251919
osa-u.5
for
4331097
osa-u.5
for
4343429
osa-u.5
for
4350806
zma-u.5
for
100282248
zma-u.5
for
100281478
zma-u.5
for
100281686


Ortholog ID: 946
Species ath ath bra bra bna bna ghi cit cit gma gma vvi vvi ppo ppo mtr mtr sly sot sot nta nta osa osa zma zma tae tae hvu hvu sbi sbi bdi bdi
Symbol AT4G28550 AT4G27100 LOC103838012 LOC103834753 LOC106444815 LOC106377765 LOC107923013 LOC102629477 LOC102609838 LOC100810054 LOC100785775 LOC100250247 LOC100251529 LOC18095918 LOC7470936 LOC11415615 LOC11443375 LOC101251919 LOC102590976 LOC102593033 LOC107830819 LOC107792990 LOC4350806 LOC4331097 LOC100304435 LOC100281686 LOC123114529 LOC123044649 LOC123425844 LOC123404178 LOC8059226 LOC8084059 LOC100838197 LOC100842425
Function* Ypt/Rab-GAP domain of gyp1p superfamily protein Ypt/Rab-GAP domain of gyp1p superfamily protein TBC1 domain family member 15 TBC1 domain family member 15 TBC1 domain family member 15 rab GTPase-activating protein 22 rab GTPase-activating protein 22 rab GTPase-activating protein 22 rab GTPase-activating protein 22-like rab GTPase-activating protein 22 rab GTPase-activating protein 22 rab GTPase-activating protein 22 rab GTPase-activating protein 22 uncharacterized LOC18095918 uncharacterized LOC7470936 rab GTPase-activating protein 22 TBC1 domain family member 17 TBC1 domain family protein TBC1 domain family member 15-like TBC1 domain family member 15-like rab GTPase-activating protein 22-like rab GTPase-activating protein 22 TBC1 domain family member 15 rab GTPase-activating protein 22 Ypt/Rab-GAP domain of gyp1p superfamily protein uncharacterized LOC100281686 rab GTPase-activating protein 22 rab GTPase-activating protein 22 rab GTPase-activating protein 22-like TBC1 domain family member 15-like GTPase-activating protein GYP7 GTPase-activating protein GYP7 TBC1 domain family member 17 TBC1 domain family member 15
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04075 Plant hormone signal transduction 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04075 Plant hormone signal transduction 2
bra04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00280 Valine, leucine and isoleucine degradation 2
bna00410 beta-Alanine metabolism 2
bna00640 Propanoate metabolism 2
bna01200 Carbon metabolism 2
bna04016 MAPK signaling pathway - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03018 RNA degradation 4
ghi03040 Spliceosome 4
ghi04146 Peroxisome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03013 Nucleocytoplasmic transport 3
cit03040 Spliceosome 3
cit03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04626 Plant-pathogen interaction 2
gma00010 Glycolysis / Gluconeogenesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00520 Amino sugar and nucleotide sugar metabolism 2
vvi01250 Biosynthesis of nucleotide sugars 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00100 Steroid biosynthesis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo01230 Biosynthesis of amino acids 3
ppo00670 One carbon pool by folate 3
ppo00270 Cysteine and methionine metabolism 2
ppo04981 Folate transport and metabolism 2
ppo00260 Glycine, serine and threonine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04075 Plant hormone signal transduction 2
mtr04626 Plant-pathogen interaction 2
mtr04130 SNARE interactions in vesicular transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00250 Alanine, aspartate and glutamate metabolism 3
mtr01200 Carbon metabolism 3
mtr00460 Cyanoamino acid metabolism 2
mtr00270 Cysteine and methionine metabolism 2
mtr00010 Glycolysis / Gluconeogenesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03008 Ribosome biogenesis in eukaryotes 3
sly03083 Polycomb repressive complex 3
sly04712 Circadian rhythm - plant 3
sly00440 Phosphonate and phosphinate metabolism 2
sly00564 Glycerophospholipid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00564 Glycerophospholipid metabolism 2
nta03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04075 Plant hormone signal transduction 2
osa04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00270 Cysteine and methionine metabolism 2
osa04814 Motor proteins 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04144 Endocytosis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03460 Fanconi anemia pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi04141 Protein processing in endoplasmic reticulum 2
sbi04145 Phagosome 2
sbi04148 Efferocytosis 2
sbi01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi04141 Protein processing in endoplasmic reticulum 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 828973 828818 103838012 103834753 106444815 106377765 107923013 102629477 102609838 100810054 100785775 100250247 100251529 18095918 7470936 11415615 11443375 101251919 102590976 102593033 107830819 107792990 4350806 4331097 100304435 100281686 123114529 123044649 123425844 123404178 8059226 8084059 100838197 100842425
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