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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-u.5   NFC5   nucleosome/chromatin assembly factor group C5 
 ath-r.7   NFC5   nucleosome/chromatin assembly factor group C5 
 ath-e.2   NFC5   nucleosome/chromatin assembly factor group C5 
 ath-u.5   FVE   Transducin family protein / WD-40 repeat family protein 
 gma-u.5   100786023   WD-40 repeat-containing protein MSI4 
 gma-u.5   FVE   WD-40 repeat-containing protein MSI4-like 
 gma-u.5   100779302   WD-40 repeat-containing protein MSI4 
 vvi-u.5   100264505   WD-40 repeat-containing protein MSI4 
 vvi-u.5   100244563   WD-40 repeat-containing protein MSI4 
 ppo-u.5   18096751   WD-40 repeat-containing protein MSI4 
 ppo-u.5   18107675   WD-40 repeat-containing protein MSI4 
 ppo-u.5   18100383   WD-40 repeat-containing protein MSI4 
 mtr-u.5   11437707   WD-40 repeat-containing protein MSI4 
 mtr-u.5   11435298   WD-40 repeat-containing protein MSI4 
 sly-u.5   101243728   WD-40 repeat-containing protein MSI4 
 sly-u.5   101267299   WD-40 repeat-containing protein MSI4 
 osa-u.5   4327826   WD-40 repeat-containing protein MSI4 
 zma-u.5   103655968   WD-40 repeat-containing protein MSI4 
 zma-u.5   541934   nucleosome/chromatin assembly factor C 
 zma-u.5   542087   nucleosome/chromatin assembly factor group C 

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Top 50 coexpressed genes to NFC5 (ath-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to NFC5 (ath-u.5 coexpression data)

CoexMap"829094"


athNFC5 | Entrez gene ID : 829094      
Species ath gma vvi ppo mtr sly osa zma sbi nta bra cre hvu cit bdi sot tae bna ghi
Paralog 4 3 2 3 2 2 1 3 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG ath03082 [list] [network] ATP-dependent chromatin remodeling (64 genes)
ath03083 [list] [network] Polycomb repressive complex (65 genes)
GO BP
GO:0040029 [list] [network] epigenetic regulation of gene expression  (174 genes)  IMP  
GO:0010629 [list] [network] negative regulation of gene expression  (323 genes)  IMP  
GO:0006355 [list] [network] regulation of DNA-templated transcription  (1618 genes)  IMP  
GO CC
GO:0035098 [list] [network] ESC/E(Z) complex  (9 genes)  IDA  
GO:0080008 [list] [network] Cul4-RING E3 ubiquitin ligase complex  (121 genes)  ISS  
GO:0005634 [list] [network] nucleus  (10367 genes)  ISM  
GO MF
GO:0005515 [list] [network] protein binding  (5363 genes)  IPI  
Protein NP_001329130.1 [sequence] [blastp]
NP_001329131.1 [sequence] [blastp]
NP_194702.2 [sequence] [blastp]
Subcellular
localization
wolf
nucl 10  (predict for NP_001329130.1)
nucl 10  (predict for NP_001329131.1)
nucl 10  (predict for NP_194702.2)
Subcellular
localization
TargetP
chlo 5,  other 3  (predict for NP_001329130.1)
chlo 5,  other 3  (predict for NP_001329131.1)
chlo 5,  other 3  (predict for NP_194702.2)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-u.5
for
NFC5

.
ath-r.7
for
NFC5

.
ath-e.2
for
NFC5

.
ath-u.5
for
FVE

.
gma-u.5
for
100786023

.
gma-u.5
for
FVE

.
gma-u.5
for
100779302

.
vvi-u.5
for
100264505

.
vvi-u.5
for
100244563

.
ppo-u.5
for
18096751

.
ppo-u.5
for
18107675

.
ppo-u.5
for
18100383

.
mtr-u.5
for
11437707

.
mtr-u.5
for
11435298

.
sly-u.5
for
101243728

.
sly-u.5
for
101267299

.
osa-u.5
for
4327826

.
zma-u.5
for
103655968

.
zma-u.5
for
541934

.
zma-u.5
for
542087

.


Ortholog ID: 3194
Species ath ath gma gma sly sly osa zma zma bra bra vvi vvi ppo ppo mtr mtr tae tae hvu ghi ghi bna cre sbi sot sot cit cit bdi nta nta
Symbol FVE NFC5 LOC100779302 LOC100796979 LOC101243728 LOC101267299 LOC4327826 LOC103655968 LOC542087 LOC103837963 LOC103853344 LOC100264505 LOC100244563 LOC18107675 LOC18096751 LOC11435298 LOC11437707 LOC123070380 LOC123078839 LOC123444247 LOC107907141 LOC107887249 LOC106447128 CHLRE_06g268450v5 LOC8069776 LOC102597405 LOC102588976 LOC102606687 LOC102609856 LOC100843662 LOC107822662 LOC107810461
Function* Transducin family protein / WD-40 repeat family protein nucleosome/chromatin assembly factor group C5 WD-40 repeat-containing protein MSI4 WD-40 repeat-containing protein MSI4 WD-40 repeat-containing protein MSI4 WD-40 repeat-containing protein MSI4 WD-40 repeat-containing protein MSI4 WD-40 repeat-containing protein MSI4 nucleosome/chromatin assembly factor group C WD-40 repeat-containing protein MSI4 WD-40 repeat-containing protein MSI5 WD-40 repeat-containing protein MSI4 WD-40 repeat-containing protein MSI4 WD-40 repeat-containing protein MSI4 WD-40 repeat-containing protein MSI4 WD-40 repeat-containing protein MSI4 WD-40 repeat-containing protein MSI4 WD-40 repeat-containing protein MSI4 WD-40 repeat-containing protein MSI4 WD-40 repeat-containing protein MSI4-like WD-40 repeat-containing protein MSI4 WD-40 repeat-containing protein MSI4 WD-40 repeat-containing protein MSI4-like uncharacterized protein WD-40 repeat-containing protein MSI4 WD-40 repeat-containing protein MSI4-like WD-40 repeat-containing protein MSI4-like WD-40 repeat-containing protein MSI4-like WD-40 repeat-containing protein MSI4 WD-40 repeat-containing protein MSI4 WD-40 repeat-containing protein MSI4-like WD-40 repeat-containing protein MSI4-like
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 4
ath00970 Aminoacyl-tRNA biosynthesis 4
ath03013 Nucleocytoplasmic transport 3
ath03410 Base excision repair 3
ath03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03030 DNA replication 3
ath03410 Base excision repair 3
ath03420 Nucleotide excision repair 3
ath03430 Mismatch repair 3
ath00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03083 Polycomb repressive complex 3
gma03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03015 mRNA surveillance pathway 2
sly03040 Spliceosome 2
sly03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03030 DNA replication 11
sly03420 Nucleotide excision repair 2
sly03430 Mismatch repair 2
sly03410 Base excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03082 ATP-dependent chromatin remodeling 3
osa03030 DNA replication 2
osa03410 Base excision repair 2
osa03015 mRNA surveillance pathway 2
osa03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03082 ATP-dependent chromatin remodeling 3
zma03410 Base excision repair 3
zma03420 Nucleotide excision repair 3
zma03083 Polycomb repressive complex 2
zma03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03010 Ribosome 8
bra03082 ATP-dependent chromatin remodeling 2
bra03083 Polycomb repressive complex 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03082 ATP-dependent chromatin remodeling 3
vvi00220 Arginine biosynthesis 2
vvi00250 Alanine, aspartate and glutamate metabolism 2
vvi03083 Polycomb repressive complex 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03050 Proteasome 6
vvi00220 Arginine biosynthesis 3
vvi01230 Biosynthesis of amino acids 3
vvi03010 Ribosome 3
vvi00250 Alanine, aspartate and glutamate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03013 Nucleocytoplasmic transport 2
ppo03030 DNA replication 2
ppo03410 Base excision repair 2
ppo03420 Nucleotide excision repair 2
ppo04814 Motor proteins 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03030 DNA replication 10
mtr03440 Homologous recombination 4
mtr03460 Fanconi anemia pathway 3
mtr03420 Nucleotide excision repair 2
mtr03430 Mismatch repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03050 Proteasome 5
mtr00710 Carbon fixation by Calvin cycle 5
mtr01200 Carbon metabolism 5
mtr03082 ATP-dependent chromatin remodeling 3
mtr00010 Glycolysis / Gluconeogenesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03082 ATP-dependent chromatin remodeling 4
tae03083 Polycomb repressive complex 4
tae03015 mRNA surveillance pathway 3
tae04814 Motor proteins 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03030 DNA replication 4
tae03410 Base excision repair 4
tae03420 Nucleotide excision repair 4
tae03430 Mismatch repair 4
tae03082 ATP-dependent chromatin remodeling 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03082 ATP-dependent chromatin remodeling 6
ghi03083 Polycomb repressive complex 4
ghi00230 Purine metabolism 2
ghi01232 Nucleotide metabolism 2
ghi04820 Cytoskeleton in muscle cells 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03082 ATP-dependent chromatin remodeling 6
ghi03083 Polycomb repressive complex 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03082 ATP-dependent chromatin remodeling 6
bna03083 Polycomb repressive complex 6
bna03013 Nucleocytoplasmic transport 2
bna03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03030 DNA replication 3
sbi03410 Base excision repair 3
sbi03420 Nucleotide excision repair 3
sbi03430 Mismatch repair 3
sbi03082 ATP-dependent chromatin remodeling 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03082 ATP-dependent chromatin remodeling 2
sot03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04141 Protein processing in endoplasmic reticulum 2
sot03440 Homologous recombination 2
sot03460 Fanconi anemia pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03050 Proteasome 3
cit03030 DNA replication 2
cit03082 ATP-dependent chromatin remodeling 2
cit03410 Base excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03083 Polycomb repressive complex 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03050 Proteasome 4
bdi03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00250 Alanine, aspartate and glutamate metabolism 4
nta01230 Biosynthesis of amino acids 4
nta03013 Nucleocytoplasmic transport 2
nta03082 ATP-dependent chromatin remodeling 2
nta03083 Polycomb repressive complex 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00250 Alanine, aspartate and glutamate metabolism 4
nta01230 Biosynthesis of amino acids 4
nta03013 Nucleocytoplasmic transport 2
nta03082 ATP-dependent chromatin remodeling 2
nta03083 Polycomb repressive complex 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 816471 829094 100779302 100796979 101243728 101267299 4327826 103655968 542087 103837963 103853344 100264505 100244563 18107675 18096751 11435298 11437707 123070380 123078839 123444247 107907141 107887249 106447128 5721891 8069776 102597405 102588976 102606687 102609856 100843662 107822662 107810461
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