ATTED-II : GeneCoexpression result

Species	Gene	Description
ath-u.5	AT4G30240	Syntaxin/t-SNARE family protein
ath-r.7	AT4G30240	Syntaxin/t-SNARE family protein
ath-e.2	AT4G30240	Syntaxin/t-SNARE family protein
ath-u.5	AT2G18860	Syntaxin/t-SNARE family protein
bra-r.6	103852820	uncharacterized LOC103852820
bra-r.6	103834682	uncharacterized LOC103834682
bra-r.6	103828360	uncharacterized LOC103828360
bna-r.1	106390052	uncharacterized LOC106390052
bna-r.1	106436110	uncharacterized LOC106436110
bna-r.1	106424100	uncharacterized LOC106424100
ghi-r.1	107920620	uncharacterized LOC107920620
ghi-r.1	107942740	uncharacterized LOC107942740
cit-r.1	102606939	hypothetical protein
gma-u.5	100786246	uncharacterized LOC100786246
gma-u.5	100776721	syntaxin-6_N domain-containing protein
vvi-u.5	100252969	uncharacterized LOC100252969
ppo-u.5	18100503	uncharacterized LOC18100503
ppo-u.5	7461586	uncharacterized LOC7461586
mtr-u.5	11424727	uncharacterized LOC11424727
osa-u.5	9268458	uncharacterized LOC9268458
zma-u.5	100272494	uncharacterized LOC100272494
sbi-r.1	8073250	uncharacterized LOC8073250
bdi-r.1	100826256	uncharacterized LOC100826256

Annotation

functional annotation

KEGG

GO BP

GO:0019060 [list] [network] intracellular transport of viral protein in host cell	(4 genes)	IDA
GO:0048193 [list] [network] Golgi vesicle transport	(76 genes)	IEA

GO CC

GO:0031901 [list] [network] early endosome membrane

(5 genes)

IDA

GO MF

Protein

NP_567842.1 [sequence] [blastp]

Subcellular
localization
wolf

golg 4, nucl 3, cyto 1, cysk_nucl 1

(predict for NP_567842.1)

Subcellular
localization
TargetP

scret 5, other 4

(predict for NP_567842.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Condition-specific^*					Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	ath-u.5 for AT4G30240	ath-r.7 for AT4G30240	ath-e.2 for AT4G30240	ath-u.5 for AT2G18860	bra-r.6 for 103852820	bra-r.6 for 103834682	bra-r.6 for 103828360	bna-r.1 for 106390052	bna-r.1 for 106436110	bna-r.1 for 106424100	ghi-r.1 for 107920620	ghi-r.1 for 107942740	cit-r.1 for 102606939	gma-u.5 for 100786246	gma-u.5 for 100776721	vvi-u.5 for 100252969	ppo-u.5 for 18100503	ppo-u.5 for 7461586	mtr-u.5 for 11424727	osa-u.5 for 9268458	zma-u.5 for 100272494	sbi-r.1 for 8073250	bdi-r.1 for 100826256

Ortholog

Ortholog ID: 9385

Species

ath

bra

bna

ghi

cit

gma

vvi

ppo

mtr

osa

zma

sbi

bdi

Symbol

Function^*

Syntaxin/t-SNARE family protein

uncharacterized LOC103852820

uncharacterized LOC103834682

uncharacterized LOC103828360

uncharacterized LOC106390052

uncharacterized LOC106436110

uncharacterized LOC106424100

uncharacterized LOC107920620

uncharacterized LOC107942740

hypothetical protein

uncharacterized LOC100786246

syntaxin-6_N domain-containing protein

uncharacterized LOC100252969

uncharacterized LOC18100503

uncharacterized LOC7461586

uncharacterized LOC11424727

uncharacterized LOC9268458

uncharacterized LOC100272494

uncharacterized LOC8073250

uncharacterized LOC100826256

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath04144	Endocytosis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath04016	MAPK signaling pathway - plant	3
ath04075	Plant hormone signal transduction	3
ath04145	Phagosome	2
ath04148	Efferocytosis	2
ath04517	IgSF CAM signaling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra04075	Plant hormone signal transduction	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna04016	MAPK signaling pathway - plant	4
bna04075	Plant hormone signal transduction	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna04016	MAPK signaling pathway - plant	4
bna04075	Plant hormone signal transduction	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna04016	MAPK signaling pathway - plant	5
bna04075	Plant hormone signal transduction	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03015	mRNA surveillance pathway	5
ghi04382	Cornified envelope formation	5
ghi00940	Phenylpropanoid biosynthesis	4
ghi00999	Biosynthesis of various plant secondary metabolites	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03040	Spliceosome	2
ghi03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03022	Basal transcription factors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma04120	Ubiquitin mediated proteolysis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo00440	Phosphonate and phosphinate metabolism	2
ppo00564	Glycerophospholipid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa04814	Motor proteins	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi04144	Endocytosis	2
sbi04120	Ubiquitin mediated proteolysis	2

Expression

Expression pattern

Entrez Gene ID^*

829147

816401

103852820

103834682

103828360

106390052

106436110

106424100

107920620

107942740

102606939

100786246

100776721

100252969

18100503

7461586

11424727

9268458

100272494

8073250

100826256

Select Species^**

Orthologous genes in OrthoFinder^**

Top 50 coexpressed genes to AT4G30240 (ath-u.5 coexpression data)

Top 50 enrichment test to AT4G30240 (ath-u.5 coexpression data)


Species	ath	bra	bna	ghi	cit	gma	vvi	ppo	mtr	osa	zma	sbi	bdi	sot	sly	nta	tae	cre	hvu
Paralog	4	3	3	2	1	2	1	2	1	1	1	1	1	0	0	0	0	0	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to AT4G30240 (ath-u.5 coexpression data)

Top 50 enrichment test to AT4G30240 (ath-u.5 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**