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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-u.5   RCE1   RUB1 conjugating enzyme 1 
 ath-r.7   RCE1   RUB1 conjugating enzyme 1 
 ath-m.9   RCE1   RUB1 conjugating enzyme 1 
 ath-e.2   RCE1   RUB1 conjugating enzyme 1 
 ath-m.4.bio   RCE1   RUB1 conjugating enzyme 1 
 ath-m.4.hor   RCE1   RUB1 conjugating enzyme 1 
 ath-m.4.lig   RCE1   RUB1 conjugating enzyme 1 
 ath-m.4.str   RCE1   RUB1 conjugating enzyme 1 
 ath-m.4.tis   RCE1   RUB1 conjugating enzyme 1 
 ath-u.5   AT2G18600   Ubiquitin-conjugating enzyme family protein 
 gma-u.5   100813186   NEDD8-conjugating enzyme Ubc12-like 
 gma-u.5   100783122   NEDD8-conjugating enzyme Ubc12 
 vvi-u.5   100255479   NEDD8-conjugating enzyme Ubc12 
 vvi-u.5   100259910   probable NEDD8-conjugating enzyme Ubc12-like 
 ppo-u.5   7456392   NEDD8-conjugating enzyme Ubc12 
 ppo-u.5   7478009   NEDD8-conjugating enzyme Ubc12 
 mtr-u.5   11408646   NEDD8-conjugating enzyme Ubc12 
 sly-u.5   101249877   ubiquitin-conjugating enzyme family protein 
 sly-u.5   543810   NEDD8-conjugating enzyme Ubc12 
 osa-u.5   4348232   NEDD8-conjugating enzyme Ubc12 
 osa-u.5   4346713   NEDD8-conjugating enzyme Ubc12 
 osa-u.5   4345411   NEDD8-conjugating enzyme Ubc12 
 zma-u.5   542170   putative ubiquitin-conjugating enzyme family 
 zma-u.5   100286302   NEDD8-conjugating enzyme Ubc12-like 

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Top 50 coexpressed genes to RCE1 (ath-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to RCE1 (ath-u.5 coexpression data)

CoexMap"829833"


athRCE1 | Entrez gene ID : 829833      
Species ath gma vvi ppo mtr sly osa zma tae hvu ghi bdi cit bra cre sbi bna nta sot
Paralog 10 2 2 2 1 2 3 2 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG ath04120 [list] [network] Ubiquitin mediated proteolysis (162 genes)
GO BP
GO:0009733 [list] [network] response to auxin  (344 genes)  IMP  
GO:0009793 [list] [network] embryo development ending in seed dormancy  (569 genes)  IGI  
GO CC
GO:0005739 [list] [network] mitochondrion  (4244 genes)  ISM  
GO MF
GO:0019788 [list] [network] NEDD8 transferase activity  (1 genes)  TAS  
GO:0019787 [list] [network] ubiquitin-like protein transferase activity  (279 genes)  IDA  
GO:0005515 [list] [network] protein binding  (5363 genes)  IPI  
Protein NP_001154289.1 [sequence] [blastp]
NP_568008.4 [sequence] [blastp]
Subcellular
localization
wolf
cyto 6,  chlo 2,  nucl 1,  mito 1  (predict for NP_001154289.1)
cyto 6,  chlo 2,  nucl 1,  mito 1  (predict for NP_568008.4)
Subcellular
localization
TargetP
other 5,  mito 3  (predict for NP_001154289.1)
other 5,  mito 3  (predict for NP_568008.4)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-u.5
for
RCE1

.
ath-r.7
for
RCE1

.
ath-m.9
for
RCE1

.
ath-e.2
for
RCE1

.
ath-m.4.bio
for
RCE1

.
ath-m.4.hor
for
RCE1

.
ath-m.4.lig
for
RCE1

.
ath-m.4.str
for
RCE1

.
ath-m.4.tis
for
RCE1

.
ath-u.5
for
AT2G18600

.
gma-u.5
for
100813186

.
gma-u.5
for
100783122

.
vvi-u.5
for
100255479

.
vvi-u.5
for
100259910

.
ppo-u.5
for
7456392

.
ppo-u.5
for
7478009

.
mtr-u.5
for
11408646

.
sly-u.5
for
101249877

.
sly-u.5
for
543810

.
osa-u.5
for
4348232

.
osa-u.5
for
4346713

.
osa-u.5
for
4345411

.
zma-u.5
for
542170

.
zma-u.5
for
100286302

.


Ortholog ID: 1786
Species ath ath gma gma sly sly osa osa zma zma bra bra vvi ppo ppo mtr tae tae hvu hvu ghi ghi bna bna cre sbi sbi sot cit cit bdi bdi nta
Symbol RCE1 AT2G18600 LOC100783122 LOC100813186 LOC543810 LOC101249877 LOC4345411 LOC4348232 LOC100286302 LOC542170 LOC103854419 LOC103835004 LOC100259910 LOC18099312 LOC7456392 LOC11408646 LOC123103499 LOC123111708 LOC123401985 LOC123451795 LOC121209655 LOC107912004 LOC106441745 LOC106389820 CHLRE_08g370850v5 LOC8065565 LOC8069865 LOC102581034 LOC127902044 LOC102629218 LOC100830039 LOC100821420 LOC107774225
Function* RUB1 conjugating enzyme 1 Ubiquitin-conjugating enzyme family protein NEDD8-conjugating enzyme Ubc12 NEDD8-conjugating enzyme Ubc12-like NEDD8-conjugating enzyme Ubc12 ubiquitin-conjugating enzyme family protein NEDD8-conjugating enzyme Ubc12 NEDD8-conjugating enzyme Ubc12 NEDD8-conjugating enzyme Ubc12-like putative ubiquitin-conjugating enzyme family NEDD8-conjugating enzyme Ubc12 NEDD8-conjugating enzyme Ubc12 probable NEDD8-conjugating enzyme Ubc12-like NEDD8-conjugating enzyme Ubc12 NEDD8-conjugating enzyme Ubc12 NEDD8-conjugating enzyme Ubc12 NEDD8-conjugating enzyme Ubc12 NEDD8-conjugating enzyme Ubc12 NEDD8-conjugating enzyme Ubc12-like NEDD8-conjugating enzyme Ubc12-like NEDD8-conjugating enzyme Ubc12 NEDD8-conjugating enzyme Ubc12 NEDD8-conjugating enzyme Ubc12-like NEDD8-conjugating enzyme Ubc12 uncharacterized protein NEDD8-conjugating enzyme Ubc12 probable NEDD8-conjugating enzyme Ubc12-like probable NEDD8-conjugating enzyme Ubc12-like NEDD8-conjugating enzyme Ubc12-like NEDD8-conjugating enzyme Ubc12 NEDD8-conjugating enzyme Ubc12 NEDD8-conjugating enzyme Ubc12 NEDD8-conjugating enzyme Ubc12
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04144 Endocytosis 3
ath04120 Ubiquitin mediated proteolysis 2
ath04145 Phagosome 2
ath04148 Efferocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04120 Ubiquitin mediated proteolysis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04120 Ubiquitin mediated proteolysis 8
gma04144 Endocytosis 3
gma03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04141 Protein processing in endoplasmic reticulum 5
sly04120 Ubiquitin mediated proteolysis 3
sly03040 Spliceosome 2
sly04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03010 Ribosome 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04120 Ubiquitin mediated proteolysis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04120 Ubiquitin mediated proteolysis 9
zma03083 Polycomb repressive complex 2
zma04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04120 Ubiquitin mediated proteolysis 4
zma04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00190 Oxidative phosphorylation 3
bra04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00280 Valine, leucine and isoleucine degradation 3
vvi00630 Glyoxylate and dicarboxylate metabolism 2
vvi01200 Carbon metabolism 2
vvi04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00190 Oxidative phosphorylation 4
ppo04145 Phagosome 3
ppo03050 Proteasome 3
ppo04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04136 Autophagy - other 5
ppo04120 Ubiquitin mediated proteolysis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03050 Proteasome 5
mtr00190 Oxidative phosphorylation 3
mtr04120 Ubiquitin mediated proteolysis 2
mtr04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04120 Ubiquitin mediated proteolysis 8
tae03040 Spliceosome 2
tae03083 Polycomb repressive complex 2
tae04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04120 Ubiquitin mediated proteolysis 5
tae03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu04120 Ubiquitin mediated proteolysis 2
hvu04130 SNARE interactions in vesicular transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu04144 Endocytosis 3
hvu01230 Biosynthesis of amino acids 2
hvu04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04120 Ubiquitin mediated proteolysis 6
ghi03008 Ribosome biogenesis in eukaryotes 4
ghi03013 Nucleocytoplasmic transport 4
ghi03250 Viral life cycle - HIV-1 4
ghi03083 Polycomb repressive complex 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04120 Ubiquitin mediated proteolysis 6
ghi03060 Protein export 2
ghi03083 Polycomb repressive complex 2
ghi04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04136 Autophagy - other 7
bna04120 Ubiquitin mediated proteolysis 2
bna04146 Peroxisome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04120 Ubiquitin mediated proteolysis 7
bna04136 Autophagy - other 3
bna00270 Cysteine and methionine metabolism 2
bna04626 Plant-pathogen interaction 2
bna04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre04120 Ubiquitin mediated proteolysis 4
cre03083 Polycomb repressive complex 2
cre04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi04142 Lysosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00480 Glutathione metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit04120 Ubiquitin mediated proteolysis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit04120 Ubiquitin mediated proteolysis 3
cit00564 Glycerophospholipid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi04120 Ubiquitin mediated proteolysis 3
bdi03060 Protein export 2
bdi00190 Oxidative phosphorylation 2
bdi04145 Phagosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi04120 Ubiquitin mediated proteolysis 2
bdi01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04120 Ubiquitin mediated proteolysis 7
nta03013 Nucleocytoplasmic transport 2
nta03040 Spliceosome 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 829833 816375 100783122 100813186 543810 101249877 4345411 4348232 100286302 542170 103854419 103835004 100259910 18099312 7456392 11408646 123103499 123111708 123401985 123451795 121209655 107912004 106441745 106389820 5726843 8065565 8069865 102581034 127902044 102629218 100830039 100821420 107774225
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