ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
ath-u.5	AT4G37820	uncharacterized protein
ath-r.7	AT4G37820	uncharacterized protein
ath-m.9	AT4G37820	uncharacterized protein
ath-e.2	AT4G37820	uncharacterized protein
ath-m.4.bio	AT4G37820	uncharacterized protein
ath-m.4.hor	AT4G37820	uncharacterized protein
ath-m.4.lig	AT4G37820	uncharacterized protein
ath-m.4.str	AT4G37820	uncharacterized protein
ath-m.4.tis	AT4G37820	uncharacterized protein
ath-u.5	AT2G22795	uncharacterized protein
ath-u.5	AT4G33740	myb-like protein X
bra-r.6	103864392	dentin sialophosphoprotein
bra-r.6	103862263	cilia- and flagella-associated protein 251
bna-r.1	106446450	dentin sialophosphoprotein-like
bna-r.1	106441156	histone-lysine N-methyltransferase SETD1B
bna-r.1	106438553	cilia- and flagella-associated protein 251
ghi-r.1	107950515	uncharacterized protein DDB_G0290685
ghi-r.1	107938867	cilia- and flagella-associated protein 251
ghi-r.1	107908575	myb-like protein X
cit-r.1	102617168	uncharacterized LOC102617168
cit-r.1	102611240	uncharacterized LOC102611240
cit-r.1	102617607	uncharacterized LOC102617607
gma-u.5	100798137	uncharacterized protein DDB_G0283697
gma-u.5	100782612	myb-like protein X
gma-u.5	100820291	dentin sialophosphoprotein
vvi-u.5	100259947	uncharacterized LOC100259947
vvi-u.5	100249180	uncharacterized LOC100249180
ppo-u.5	7467238	uncharacterized LOC7467238
ppo-u.5	7478679	uncharacterized LOC7478679
ppo-u.5	18101243	uncharacterized LOC18101243
mtr-u.5	25485293	dentin sialophosphoprotein
mtr-u.5	11446447	myb-like protein X
sly-u.5	101258200	uncharacterized LOC101258200
sot-r.1	102600183	DNA-directed RNA polymerase subunit delta-like
sot-r.1	102592676	high mobility group nucleosome-binding domain-containing protein 5-like
nta-r.1	107798684	uncharacterized LOC107798684
nta-r.1	107768377	uncharacterized LOC107768377
osa-u.5	4333969	uncharacterized LOC4333969
osa-u.5	4334267	uncharacterized LOC4334267
zma-u.5	100193318	uncharacterized LOC100193318
zma-u.5	100279455	uncharacterized LOC100279455
tae-r.2	123087022	uncharacterized protein DDB_G0283697
tae-r.2	123090937	uncharacterized protein DDB_G0283697
tae-r.2	123095969	uncharacterized protein DDB_G0283697
hvu-r.1	123447638	uncharacterized protein DDB_G0283697-like
sbi-r.1	8059972	uncharacterized protein DDB_G0290803
bdi-r.1	100827732	protein starmaker

Top 50 coexpressed genes to AT4G37820 (ath-u.5 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to AT4G37820 (ath-u.5 coexpression data)

CoexMap"829938"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO CC

GO:0000138 [list] [network] Golgi trans cisterna	(87 genes)	HDA
GO:0005802 [list] [network] trans-Golgi network	(279 genes)	HDA
GO:0005768 [list] [network] endosome	(359 genes)	HDA
GO:0005794 [list] [network] Golgi apparatus	(1198 genes)	HDA
GO:0005634 [list] [network] nucleus	(10367 genes)	ISM

GO MF

Protein

NP_001328506.1 [sequence] [blastp]
NP_195495.1 [sequence] [blastp]

Subcellular
localization
wolf

nucl 6, chlo 1, cyto 1, mito 1, plas 1, mito_plas 1, cyto_plas 1	(predict for NP_001328506.1)
nucl 6, chlo 1, cyto 1, mito 1, plas 1, mito_plas 1, cyto_plas 1	(predict for NP_195495.1)

Subcellular
localization
TargetP

mito 5	(predict for NP_001328506.1)
mito 5	(predict for NP_195495.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target				Condition-specific^*					Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	ath-u.5 for AT4G37820	ath-r.7 for AT4G37820	ath-m.9 for AT4G37820	ath-e.2 for AT4G37820	ath-m.4.bio for AT4G37820	ath-m.4.hor for AT4G37820	ath-m.4.lig for AT4G37820	ath-m.4.str for AT4G37820	ath-m.4.tis for AT4G37820	ath-u.5 for AT2G22795	ath-u.5 for AT4G33740	bra-r.6 for 103864392	bra-r.6 for 103862263	bna-r.1 for 106446450	bna-r.1 for 106441156	bna-r.1 for 106438553	ghi-r.1 for 107950515	ghi-r.1 for 107938867	ghi-r.1 for 107908575	cit-r.1 for 102617168	cit-r.1 for 102611240	cit-r.1 for 102617607	gma-u.5 for 100798137	gma-u.5 for 100782612	gma-u.5 for 100820291	vvi-u.5 for 100259947	vvi-u.5 for 100249180	ppo-u.5 for 7467238	ppo-u.5 for 7478679	ppo-u.5 for 18101243	mtr-u.5 for 25485293	mtr-u.5 for 11446447	sly-u.5 for 101258200	sot-r.1 for 102600183	sot-r.1 for 102592676	nta-r.1 for 107798684	nta-r.1 for 107768377	osa-u.5 for 4333969	osa-u.5 for 4334267	zma-u.5 for 100193318	zma-u.5 for 100279455	tae-r.2 for 123087022	tae-r.2 for 123090937	tae-r.2 for 123095969	hvu-r.1 for 123447638	sbi-r.1 for 8059972	bdi-r.1 for 100827732

Ortholog

Ortholog ID: 2982

Species

ath

bra

bna

ghi

cit

gma

vvi

ppo

mtr

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

Symbol

Function^*

uncharacterized protein

myb-like protein X

dentin sialophosphoprotein

cilia- and flagella-associated protein 251

DNA ligase 1

uncharacterized protein DDB_G0290685

cilia- and flagella-associated protein 251

myb-like protein X

uncharacterized LOC102617168

uncharacterized LOC102611240

uncharacterized LOC102617607

myb-like protein X

uncharacterized protein DDB_G0290685

uncharacterized LOC100259947

uncharacterized LOC100249180

uncharacterized LOC7467238

uncharacterized LOC7478679

spore wall protein 2

dentin sialophosphoprotein

myb-like protein X

uncharacterized LOC101258200

DNA-directed RNA polymerase subunit delta-like

high mobility group nucleosome-binding domain-containing protein 5-like

uncharacterized LOC107798684

uncharacterized LOC107768377

uncharacterized LOC4333969

uncharacterized LOC4334267

uncharacterized LOC100193318

uncharacterized LOC100279455

uncharacterized protein DDB_G0283697

uncharacterized protein DDB_G0283697-like

uncharacterized protein DDB_G0290803

protein starmaker

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03083	Polycomb repressive complex	2
bra04120	Ubiquitin mediated proteolysis	2
bra04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03083	Polycomb repressive complex	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03040	Spliceosome	4
bna03083	Polycomb repressive complex	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03250	Viral life cycle - HIV-1	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma00520	Amino sugar and nucleotide sugar metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo00520	Amino sugar and nucleotide sugar metabolism	2
ppo01250	Biosynthesis of nucleotide sugars	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot00053	Ascorbate and aldarate metabolism	3
sot00520	Amino sugar and nucleotide sugar metabolism	3
sot01240	Biosynthesis of cofactors	3
sot01250	Biosynthesis of nucleotide sugars	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03040	Spliceosome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03040	Spliceosome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa00500	Starch and sucrose metabolism	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03250	Viral life cycle - HIV-1	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03250	Viral life cycle - HIV-1	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae04626	Plant-pathogen interaction	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae04626	Plant-pathogen interaction	3
tae00541	Biosynthesis of various nucleotide sugars	3
tae01250	Biosynthesis of nucleotide sugars	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03040	Spliceosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi04141	Protein processing in endoplasmic reticulum	2

Expression

Expression pattern

Entrez Gene ID^*

829938

816810

829516

103864392

103844614

106389762

106360857

106361392

107950515

107938867

107908575

102617168

102611240

102617607

100782612

102661936

100259947

100249180

7467238

7478679

18102079

25485293

11446447

101258200

102600183

102592676

107798684

107768377

4333969

4334267

100193318

100279455

123087022

123090937

123095969

123447638

8059972

100827732

The preparation time of this page was 0.1 [sec].


Species	ath	bra	bna	ghi	cit	gma	vvi	ppo	mtr	sly	sot	nta	osa	zma	tae	hvu	sbi	bdi	cre
Paralog	11	2	3	3	3	3	2	3	2	1	2	2	2	2	3	1	1	1	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to AT4G37820 (ath-u.5 coexpression data)

Top 50 enrichment test to AT4G37820 (ath-u.5 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**