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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-u.5   SHL1   PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein 
 ath-r.7   SHL1   PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein 
 ath-m.9   SHL1   PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein 
 ath-e.2   SHL1   PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein 
 ath-m.4.bio   SHL1   PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein 
 ath-m.4.hor   SHL1   PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein 
 ath-m.4.lig   SHL1   PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein 
 ath-m.4.str   SHL1   PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein 
 ath-m.4.tis   SHL1   PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein 
 ath-u.5   EBS   PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein 
 bra-r.6   103834239   chromatin remodeling protein EBS 
 bra-r.6   103835144   chromatin remodeling protein SHL 
 bra-r.6   103861289   chromatin remodeling protein EBS 
 bna-r.1   106358010   chromatin remodeling protein EBS 
 bna-r.1   106437645   chromatin remodeling protein EBS 
 bna-r.1   106389930   chromatin remodeling protein EBS-like 
 ghi-r.1   107913543   chromatin remodeling protein SHL 
 ghi-r.1   107905907   chromatin remodeling protein EBS 
 ghi-r.1   107918307   chromatin remodeling protein SHL 
 cit-r.1   102614676   chromatin remodeling protein EBS 
 cit-r.1   102619768   chromatin remodeling protein EBS 
 cit-r.1   102622005   chromatin remodeling protein SHL 
 gma-u.5   100810424   BAH and coiled-coil domain-containing protein 1-like 
 gma-u.5   100800993   chromatin remodeling protein EBS-like 
 gma-u.5   100787968   chromatin remodeling protein SHL 
 vvi-u.5   100854261   chromatin remodeling protein EBS 
 vvi-u.5   100253455   chromatin remodeling protein EBS 
 vvi-u.5   100252013   chromatin remodeling protein EBS 
 ppo-u.5   7456354   chromatin remodeling protein SHL 
 ppo-u.5   18097327   chromatin remodeling protein EBS 
 ppo-u.5   18105341   chromatin remodeling protein EBS 
 mtr-u.5   25487270   chromatin remodeling protein EBS 
 mtr-u.5   11421533   chromatin remodeling protein SHL 
 sly-u.5   101247139   chromatin remodeling protein EBS-like 
 sly-u.5   101253288   chromatin remodeling protein EBS 
 sot-r.1   102601422   protein polybromo-1-like 
 sot-r.1   102577599   uncharacterized LOC102577599 
 nta-r.1   107792107   chromatin remodeling protein EBS-like 
 nta-r.1   107783649   chromatin remodeling protein EBS 
 nta-r.1   107811513   chromatin remodeling protein EBS 
 osa-u.5   4345596   chromatin remodeling protein EBS 
 osa-u.5   4346950   chromatin remodeling protein EBS 
 osa-u.5   4342595   chromatin remodeling protein EBS 
 zma-u.5   100286231   uncharacterized LOC100286231 
 zma-u.5   100284042   uncharacterized LOC100284042 
 zma-u.5   100193016   uncharacterized LOC100193016 
 tae-r.2   123044807   chromatin remodeling protein SHL 
 tae-r.2   123052726   chromatin remodeling protein SHL 
 tae-r.2   123105449   chromatin remodeling protein EBS 
 hvu-r.1   123426108   chromatin remodeling protein EBS-like 
 hvu-r.1   123395876   chromatin remodeling protein EBS-like 
 sbi-r.1   8056218   chromatin remodeling protein EBS 
 sbi-r.1   8075023   chromatin remodeling protein EBS 
 sbi-r.1   8075625   chromatin remodeling protein EBS 
 bdi-r.1   100825334   chromatin remodeling protein EBS 
 bdi-r.1   100823715   chromatin remodeling protein EBS 
 bdi-r.1   100845315   chromatin remodeling protein EBS 
 cre-r.1   CHLRE_16g675246v5   uncharacterized protein 

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Top 50 coexpressed genes to SHL1 (ath-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to SHL1 (ath-u.5 coexpression data)

CoexMap"830065"


athSHL1 | Entrez gene ID : 830065      
Species ath bra bna ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 10 3 3 3 3 3 3 3 2 2 2 3 3 3 3 2 3 3 1
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:2000028 [list] [network] regulation of photoperiodism, flowering  (101 genes)  IMP  
GO:0045814 [list] [network] negative regulation of gene expression, epigenetic  (117 genes)  IMP  
GO:0010228 [list] [network] vegetative to reproductive phase transition of meristem  (186 genes)  IMP  
GO:0009791 [list] [network] post-embryonic development  (1579 genes)  IMP  
GO CC
GO:0005634 [list] [network] nucleus  (10367 genes)  IDA ISM  
GO MF
GO:0003682 [list] [network] chromatin binding  (103 genes)  IEA  
GO:0000976 [list] [network] transcription cis-regulatory region binding  (716 genes)  IDA  
GO:0003700 [list] [network] DNA-binding transcription factor activity  (1620 genes)  ISS  
GO:0005515 [list] [network] protein binding  (5363 genes)  IPI  
Protein NP_001190959.1 [sequence] [blastp]
NP_568053.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 9,  mito 1,  extr 1  (predict for NP_001190959.1)
nucl 8,  mito 1,  plas 1,  extr 1,  mito_plas 1  (predict for NP_568053.1)
Subcellular
localization
TargetP
mito 3,  other 3  (predict for NP_001190959.1)
mito 3,  other 3  (predict for NP_568053.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-u.5
for
SHL1
ath-r.7
for
SHL1
ath-m.9
for
SHL1
ath-e.2
for
SHL1
ath-m.4.bio
for
SHL1
ath-m.4.hor
for
SHL1
ath-m.4.lig
for
SHL1
ath-m.4.str
for
SHL1
ath-m.4.tis
for
SHL1
ath-u.5
for
EBS
bra-r.6
for
103834239
bra-r.6
for
103835144
bra-r.6
for
103861289
bna-r.1
for
106358010
bna-r.1
for
106437645
bna-r.1
for
106389930
ghi-r.1
for
107913543
ghi-r.1
for
107905907
ghi-r.1
for
107918307
cit-r.1
for
102614676
cit-r.1
for
102619768
cit-r.1
for
102622005
gma-u.5
for
100810424
gma-u.5
for
100800993
gma-u.5
for
100787968
vvi-u.5
for
100854261
vvi-u.5
for
100253455
vvi-u.5
for
100252013
ppo-u.5
for
7456354
ppo-u.5
for
18097327
ppo-u.5
for
18105341
mtr-u.5
for
25487270
mtr-u.5
for
11421533
sly-u.5
for
101247139
sly-u.5
for
101253288
sot-r.1
for
102601422
sot-r.1
for
102577599
nta-r.1
for
107792107
nta-r.1
for
107783649
nta-r.1
for
107811513
osa-u.5
for
4345596
osa-u.5
for
4346950
osa-u.5
for
4342595
zma-u.5
for
100286231
zma-u.5
for
100284042
zma-u.5
for
100193016
tae-r.2
for
123044807
tae-r.2
for
123052726
tae-r.2
for
123105449
hvu-r.1
for
123426108
hvu-r.1
for
123395876
sbi-r.1
for
8056218
sbi-r.1
for
8075023
sbi-r.1
for
8075625
bdi-r.1
for
100825334
bdi-r.1
for
100823715
bdi-r.1
for
100845315
cre-r.1
for
CHLRE_16g675246v5


Ortholog ID: 993
Species ath ath bra bra bra bna bna bna ghi ghi ghi cit cit cit gma gma vvi vvi vvi ppo ppo ppo mtr mtr mtr sly sly sly sot sot nta nta nta osa osa osa zma zma zma tae tae tae hvu hvu sbi sbi sbi bdi bdi bdi cre
Symbol SHL1 EBS LOC103835144 LOC103861289 LOC103859811 LOC106437645 LOC106366983 LOC106420831 LOC107913543 LOC107928932 LOC107958293 LOC102614676 LOC102619768 LOC102622005 LOC100787968 LOC100800806 LOC100854261 LOC100253455 LOC100252013 LOC7456354 LOC7489883 LOC7484543 LOC11421533 LOC11422794 LOC25487657 LOC101247139 LOC101253288 LOC101264075 LOC102577599 LOC102587229 LOC107826560 LOC107828284 LOC107759203 LOC4346950 LOC4342595 LOC4334444 LOC100286231 LOC100217096 LOC100285536 LOC542770 LOC123121440 LOC123113738 LOC123426108 LOC123395876 LOC8056218 LOC8075023 LOC8075625 LOC100825334 LOC100823715 LOC100845315 CHLRE_16g675246v5
Function* PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein chromatin remodeling protein SHL chromatin remodeling protein EBS chromatin remodeling protein EBS chromatin remodeling protein EBS chromatin remodeling protein EBS-like chromatin remodeling protein EBS-like chromatin remodeling protein SHL chromatin remodeling protein SHL chromatin remodeling protein EBS chromatin remodeling protein EBS chromatin remodeling protein EBS chromatin remodeling protein SHL chromatin remodeling protein SHL chromatin remodeling protein EBS chromatin remodeling protein EBS chromatin remodeling protein EBS chromatin remodeling protein EBS chromatin remodeling protein SHL chromatin remodeling protein EBS chromatin remodeling protein EBS chromatin remodeling protein SHL chromatin remodeling protein SHL chromatin remodeling protein EBS chromatin remodeling protein EBS-like chromatin remodeling protein EBS chromatin remodeling protein EBS uncharacterized LOC102577599 protein winged eye-like chromatin remodeling protein EBS-like chromatin remodeling protein SHL-like chromatin remodeling protein EBS chromatin remodeling protein EBS chromatin remodeling protein EBS chromatin remodeling protein EBS uncharacterized LOC100286231 uncharacterized LOC100217096 uncharacterized LOC100285536 chromatin remodeling protein EBS chromatin remodeling protein EBS chromatin remodeling protein EBS chromatin remodeling protein EBS-like chromatin remodeling protein EBS-like chromatin remodeling protein EBS chromatin remodeling protein EBS chromatin remodeling protein EBS chromatin remodeling protein EBS chromatin remodeling protein EBS chromatin remodeling protein EBS uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 6
ath03015 mRNA surveillance pathway 5
ath03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00620 Pyruvate metabolism 7
bra00010 Glycolysis / Gluconeogenesis 6
bra01200 Carbon metabolism 6
bra00020 Citrate cycle (TCA cycle) 5
bra00785 Lipoic acid metabolism 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00620 Pyruvate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03083 Polycomb repressive complex 2
cit04120 Ubiquitin mediated proteolysis 2
cit04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04016 MAPK signaling pathway - plant 2
gma04144 Endocytosis 2
gma04145 Phagosome 2
gma04148 Efferocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03010 Ribosome 3
vvi00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo01200 Carbon metabolism 3
ppo04141 Protein processing in endoplasmic reticulum 2
ppo00260 Glycine, serine and threonine metabolism 2
ppo00630 Glyoxylate and dicarboxylate metabolism 2
ppo03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00500 Starch and sucrose metabolism 2
mtr00520 Amino sugar and nucleotide sugar metabolism 2
mtr01250 Biosynthesis of nucleotide sugars 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03083 Polycomb repressive complex 2
mtr04120 Ubiquitin mediated proteolysis 2
mtr04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03040 Spliceosome 2
mtr03018 RNA degradation 2
mtr00564 Glycerophospholipid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03040 Spliceosome 3
sot04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04136 Autophagy - other 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03018 RNA degradation 2
nta03410 Base excision repair 2
nta00620 Pyruvate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00520 Amino sugar and nucleotide sugar metabolism 2
nta04136 Autophagy - other 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 2
nta00620 Pyruvate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04141 Protein processing in endoplasmic reticulum 3
osa04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04120 Ubiquitin mediated proteolysis 2
zma03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03018 RNA degradation 3
tae00510 N-Glycan biosynthesis 2
tae00563 Glycosylphosphatidylinositol (GPI)-anchor biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03020 RNA polymerase 3
tae03420 Nucleotide excision repair 3
tae03018 RNA degradation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03020 RNA polymerase 4
tae03420 Nucleotide excision repair 4
tae04016 MAPK signaling pathway - plant 3
tae03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu04120 Ubiquitin mediated proteolysis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi04141 Protein processing in endoplasmic reticulum 4
sbi04626 Plant-pathogen interaction 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi04626 Plant-pathogen interaction 2
bdi04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00190 Oxidative phosphorylation 4
bdi04142 Lysosome 4
bdi04145 Phagosome 4
bdi04130 SNARE interactions in vesicular transport 3
bdi03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi04130 SNARE interactions in vesicular transport 2
bdi04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03010 Ribosome 6
cre04120 Ubiquitin mediated proteolysis 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 830065 828303 103835144 103861289 103859811 106437645 106366983 106420831 107913543 107928932 107958293 102614676 102619768 102622005 100787968 100800806 100854261 100253455 100252013 7456354 7489883 7484543 11421533 11422794 25487657 101247139 101253288 101264075 102577599 102587229 107826560 107828284 107759203 4346950 4342595 4334444 100286231 100217096 100285536 542770 123121440 123113738 123426108 123395876 8056218 8075023 8075625 100825334 100823715 100845315 5724824
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