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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-u.5   SAMC1   S-adenosylmethionine carrier 1 
 ath-r.7   SAMC1   S-adenosylmethionine carrier 1 
 ath-m.9   SAMC1   S-adenosylmethionine carrier 1 
 ath-e.2   SAMC1   S-adenosylmethionine carrier 1 
 ath-m.4.bio   SAMC1   S-adenosylmethionine carrier 1 
 ath-m.4.hor   SAMC1   S-adenosylmethionine carrier 1 
 ath-m.4.lig   SAMC1   S-adenosylmethionine carrier 1 
 ath-m.4.str   SAMC1   S-adenosylmethionine carrier 1 
 ath-m.4.tis   SAMC1   S-adenosylmethionine carrier 1 
 ath-u.5   SAMC2   S-adenosylmethionine carrier 2 
 gma-u.5   100799825   S-adenosylmethionine carrier 1, chloroplastic/mitochondrial 
 gma-u.5   100800051   probable S-adenosylmethionine carrier 2, chloroplastic 
 gma-u.5   100811130   S-adenosylmethionine carrier 1, chloroplastic/mitochondrial 
 vvi-u.5   100261204   S-adenosylmethionine carrier 1, chloroplastic/mitochondrial 
 vvi-u.5   100264695   S-adenosylmethionine carrier 1, chloroplastic/mitochondrial 
 ppo-u.5   7477137   S-adenosylmethionine carrier 1, chloroplastic/mitochondrial 
 ppo-u.5   7492487   S-adenosylmethionine carrier 1, chloroplastic/mitochondrial 
 mtr-u.5   11420332   S-adenosylmethionine carrier 1, chloroplastic/mitochondrial 
 mtr-u.5   11439953   S-adenosylmethionine carrier 1, chloroplastic/mitochondrial 
 sly-u.5   101258046   S-adenosylmethionine carrier 1, chloroplastic/mitochondrial-like 
 sly-u.5   101260718   S-adenosylmethionine carrier 1, chloroplastic/mitochondrial 
 osa-u.5   4342959   S-adenosylmethionine carrier 1, chloroplastic/mitochondrial 
 osa-u.5   4338540   S-adenosylmethionine carrier 1, chloroplastic/mitochondrial 
 zma-u.5   100381476   S-adenosylmethionine carrier 1 chloroplastic/mitochondrial 
 zma-u.5   100191279   uncharacterized LOC100191279 

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Top 50 coexpressed genes to SAMC1 (ath-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to SAMC1 (ath-u.5 coexpression data)

CoexMap"830101"


athSAMC1 | Entrez gene ID : 830101      
Species ath gma vvi ppo mtr sly osa zma bdi hvu bra cit bna sbi ghi sot nta cre tae
Paralog 10 3 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0015805 [list] [network] S-adenosyl-L-methionine transport  (1 genes)  IDA  
GO:0009658 [list] [network] chloroplast organization  (197 genes)  IMP  
GO CC
GO:0009941 [list] [network] chloroplast envelope  (585 genes)  HDA  
GO:0005886 [list] [network] plasma membrane  (2598 genes)  HDA  
GO:0005739 [list] [network] mitochondrion  (4244 genes)  ISM  
GO:0009507 [list] [network] chloroplast  (5014 genes)  HDA IDA  
GO:0009536 [list] [network] plastid  (5443 genes)  HDA  
GO MF
GO:0000095 [list] [network] S-adenosyl-L-methionine transmembrane transporter activity  (1 genes)  IDA  
Protein NP_001190968.1 [sequence] [blastp]
NP_001328265.1 [sequence] [blastp]
NP_568060.1 [sequence] [blastp]
Subcellular
localization
wolf
cyto 4,  chlo 4,  mito 1  (predict for NP_001190968.1)
cyto 4,  chlo 4,  mito 1  (predict for NP_001328265.1)
cyto 4,  chlo 4,  mito 1  (predict for NP_568060.1)
Subcellular
localization
TargetP
chlo 6,  other 3  (predict for NP_001190968.1)
chlo 6,  other 3  (predict for NP_001328265.1)
chlo 6,  other 3  (predict for NP_568060.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-u.5
for
SAMC1
ath-r.7
for
SAMC1
ath-m.9
for
SAMC1
ath-e.2
for
SAMC1
ath-m.4.bio
for
SAMC1
ath-m.4.hor
for
SAMC1
ath-m.4.lig
for
SAMC1
ath-m.4.str
for
SAMC1
ath-m.4.tis
for
SAMC1
ath-u.5
for
SAMC2
gma-u.5
for
100799825
gma-u.5
for
100800051
gma-u.5
for
100811130
vvi-u.5
for
100261204
vvi-u.5
for
100264695
ppo-u.5
for
7477137
ppo-u.5
for
7492487
mtr-u.5
for
11420332
mtr-u.5
for
11439953
sly-u.5
for
101258046
sly-u.5
for
101260718
osa-u.5
for
4342959
osa-u.5
for
4338540
zma-u.5
for
100381476
zma-u.5
for
100191279


Ortholog ID: 3836
Species ath ath bra bra bna ghi ghi cit cit gma gma vvi vvi ppo ppo mtr mtr sly sly sot sot nta nta osa osa zma zma tae tae hvu hvu sbi sbi bdi bdi cre
Symbol SAMC2 SAMC1 LOC103840025 LOC103835119 LOC111209316 LOC107945505 LOC121217874 LOC102628370 LOC102631451 LOC100800051 LOC100799825 LOC100261204 LOC100264695 LOC7492487 LOC7477137 LOC11439953 LOC11420332 LOC101258046 LOC101260718 LOC102592118 LOC102579591 LOC107787574 LOC107788912 LOC4338540 LOC4342959 LOC100381476 LOC100191279 LOC123087623 LOC123114313 LOC123395096 LOC123399265 LOC8071064 LOC8075172 LOC100835358 LOC100834382 CHLRE_06g286250v5
Function* S-adenosylmethionine carrier 2 S-adenosylmethionine carrier 1 probable S-adenosylmethionine carrier 2, chloroplastic S-adenosylmethionine carrier 1, chloroplastic/mitochondrial S-adenosylmethionine carrier 1, chloroplastic/mitochondrial S-adenosylmethionine carrier 1, chloroplastic/mitochondrial S-adenosylmethionine carrier 1, chloroplastic/mitochondrial S-adenosylmethionine carrier 1, chloroplastic/mitochondrial S-adenosylmethionine carrier 1, chloroplastic/mitochondrial-like probable S-adenosylmethionine carrier 2, chloroplastic S-adenosylmethionine carrier 1, chloroplastic/mitochondrial S-adenosylmethionine carrier 1, chloroplastic/mitochondrial S-adenosylmethionine carrier 1, chloroplastic/mitochondrial S-adenosylmethionine carrier 1, chloroplastic/mitochondrial S-adenosylmethionine carrier 1, chloroplastic/mitochondrial S-adenosylmethionine carrier 1, chloroplastic/mitochondrial S-adenosylmethionine carrier 1, chloroplastic/mitochondrial S-adenosylmethionine carrier 1, chloroplastic/mitochondrial-like S-adenosylmethionine carrier 1, chloroplastic/mitochondrial S-adenosylmethionine carrier 1, chloroplastic/mitochondrial S-adenosylmethionine carrier 1, chloroplastic/mitochondrial-like putative S-adenosylmethionine carrier 2, chloroplastic S-adenosylmethionine carrier 1, chloroplastic/mitochondrial S-adenosylmethionine carrier 1, chloroplastic/mitochondrial S-adenosylmethionine carrier 1, chloroplastic/mitochondrial S-adenosylmethionine carrier 1 chloroplastic/mitochondrial uncharacterized LOC100191279 S-adenosylmethionine carrier 1, chloroplastic/mitochondrial S-adenosylmethionine carrier 1, chloroplastic/mitochondrial S-adenosylmethionine carrier 1, chloroplastic/mitochondrial-like S-adenosylmethionine carrier 1, chloroplastic/mitochondrial-like S-adenosylmethionine carrier 1, chloroplastic/mitochondrial S-adenosylmethionine carrier 1, chloroplastic/mitochondrial S-adenosylmethionine carrier 1, chloroplastic/mitochondrial S-adenosylmethionine carrier 1, chloroplastic/mitochondrial uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00541 Biosynthesis of various nucleotide sugars 2
ath01250 Biosynthesis of nucleotide sugars 2
ath00561 Glycerolipid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03010 Ribosome 9
ath00240 Pyrimidine metabolism 2
ath01232 Nucleotide metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00970 Aminoacyl-tRNA biosynthesis 7
bra03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00010 Glycolysis / Gluconeogenesis 6
bna00562 Inositol phosphate metabolism 6
bna00051 Fructose and mannose metabolism 4
bna00710 Carbon fixation by Calvin cycle 4
bna01200 Carbon metabolism 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00440 Phosphonate and phosphinate metabolism 3
ghi00564 Glycerophospholipid metabolism 3
ghi00565 Ether lipid metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00563 Glycosylphosphatidylinositol (GPI)-anchor biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 3
gma00510 N-Glycan biosynthesis 2
gma00513 Various types of N-glycan biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi01240 Biosynthesis of cofactors 2
vvi00230 Purine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr01240 Biosynthesis of cofactors 4
mtr00860 Porphyrin metabolism 3
mtr00230 Purine metabolism 2
mtr00240 Pyrimidine metabolism 2
mtr01232 Nucleotide metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly01240 Biosynthesis of cofactors 3
sly01250 Biosynthesis of nucleotide sugars 3
sly01200 Carbon metabolism 2
sly00051 Fructose and mannose metabolism 2
sly00520 Amino sugar and nucleotide sugar metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00340 Histidine metabolism 4
nta01230 Biosynthesis of amino acids 4
nta03060 Protein export 2
nta00970 Aminoacyl-tRNA biosynthesis 2
nta03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00860 Porphyrin metabolism 4
osa01240 Biosynthesis of cofactors 3
osa03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03018 RNA degradation 2
hvu01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00564 Glycerophospholipid metabolism 2
sbi00970 Aminoacyl-tRNA biosynthesis 2
sbi01240 Biosynthesis of cofactors 2
sbi04146 Peroxisome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi01240 Biosynthesis of cofactors 3
sbi00061 Fatty acid biosynthesis 2
sbi00780 Biotin metabolism 2
sbi01212 Fatty acid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00970 Aminoacyl-tRNA biosynthesis 3
bdi00860 Porphyrin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi01240 Biosynthesis of cofactors 4
bdi00970 Aminoacyl-tRNA biosynthesis 4
bdi00920 Sulfur metabolism 2
bdi00860 Porphyrin metabolism 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 840304 830101 103840025 103835119 111209316 107945505 121217874 102628370 102631451 100800051 100799825 100261204 100264695 7492487 7477137 11439953 11420332 101258046 101260718 102592118 102579591 107787574 107788912 4338540 4342959 100381476 100191279 123087623 123114313 123395096 123399265 8071064 8075172 100835358 100834382 5721011
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